Biomolecular Simulation (BioSIM)
Center for Health Technology and Services Research (CINTESIS) :: Clinical and Translational Research
AuthID: I-000-B6D
Publications Actions
Publications at Authenticus Institutional Profile
An Authenticus institution (group) is an organization which consists of a set of researchers (institutional/group team). The set of researchers depends on the organizational structure of the institution per year and can be set at the institution profile, under ‘Researchers’ interface. Based on the institutional team we produce listings of publications, statistics and institutional reports.
Publications displayed at an Authenticus institutional profile depend on two parameters:
- Researchers team associated with the institution per year.
- Publications source type.
We define 3 types of publication sources:
- Validated by team members - includes all publications validated by team members. Requires the definition of the institutional team.
- All published by team members - includes all publications validated by the institution team members plus all not-validated (only identified) publications. Requires the definition of the institutional team.
- Affiliation Based - includes publications that have the institution/group in the publication affiliation. Does not require institutional team, but at the same time does not guarantee that all publications will be listed.
External
Internal
No data about last update.
Rules:
This actions updates publications citations of every team member.
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
No data about last update.
Rules:
This actions updates all pre print publications of the group/institution.
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Publications Count: 436
8 Team MembersFilters -> Year: 2026
261
TITLE: The Sulfur Shift: An Activation Mechanism for Periplasmic Nitrate Reductase and Formate Dehydrogenase Full Text
AUTHORS: Nuno M F S A Cerqueira ; Pedro A Fernandes ; Pablo J Gonzalez; Jose J G Moura ; Maria J Ramos ;
PUBLISHED: 2013, SOURCE: INORGANIC CHEMISTRY, VOLUME: 52, ISSUE: 19, PAGES: 10766-10772
AUTHORS: Nuno M F S A Cerqueira ; Pedro A Fernandes ; Pablo J Gonzalez; Jose J G Moura ; Maria J Ramos ;
PUBLISHED: 2013, SOURCE: INORGANIC CHEMISTRY, VOLUME: 52, ISSUE: 19, PAGES: 10766-10772
262
TITLE: TLR2 IS SIGNIFICANTLY UP-REGULATED IN ACUTE REJECTION OF KIDNEY TRANSPLANTS Full Text
AUTHORS: Paula Xavier; Susana Sampaio; Sergio Gaiao ; Jose G G Oliveira ;
PUBLISHED: 2013, SOURCE: TRANSPLANT INTERNATIONAL, VOLUME: 26, PAGES: 164-164
AUTHORS: Paula Xavier; Susana Sampaio; Sergio Gaiao ; Jose G G Oliveira ;
PUBLISHED: 2013, SOURCE: TRANSPLANT INTERNATIONAL, VOLUME: 26, PAGES: 164-164
INDEXED IN: 
WOS
WOS263
TITLE: TOX3 Mutations in Breast Cancer Full Text
AUTHORS: James Owain Jones; Suet Feung Chin; Li An Wong Taylor; Donna Leaford; Bruce A J Ponder; Carlos Caldas; Ana Teresa Maia ;
PUBLISHED: 2013, SOURCE: PLOS ONE, VOLUME: 8, ISSUE: 9
AUTHORS: James Owain Jones; Suet Feung Chin; Li An Wong Taylor; Donna Leaford; Bruce A J Ponder; Carlos Caldas; Ana Teresa Maia ;
PUBLISHED: 2013, SOURCE: PLOS ONE, VOLUME: 8, ISSUE: 9
264
TITLE: Unraveling the Enigmatic Mechanism of L-Asparaginase II with QM/QM Calculations Full Text
AUTHORS: Diana S Gesto; Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2013, SOURCE: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, VOLUME: 135, ISSUE: 19, PAGES: 7146-7158
AUTHORS: Diana S Gesto; Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2013, SOURCE: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, VOLUME: 135, ISSUE: 19, PAGES: 7146-7158
265
TITLE: Volarea - A Bioinformatics Tool to Calculate the Surface Area and the Volume of Molecular Systems Full Text
AUTHORS: Joao V Ribeiro; Juan A C Tamames; Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2013, SOURCE: CHEMICAL BIOLOGY & DRUG DESIGN, VOLUME: 82, ISSUE: 6, PAGES: 743-755
AUTHORS: Joao V Ribeiro; Juan A C Tamames; Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2013, SOURCE: CHEMICAL BIOLOGY & DRUG DESIGN, VOLUME: 82, ISSUE: 6, PAGES: 743-755
266
TITLE: Allele-specific expression analysis methods for high-density SNP microarray data Full Text
AUTHORS: Ruijie J Liu; Ana Teresa Maia ; Roslin Russell; Carlos Caldas; Bruce A Ponder; Matthew E Ritchie;
PUBLISHED: 2012, SOURCE: BIOINFORMATICS, VOLUME: 28, ISSUE: 8, PAGES: 1102-1108
AUTHORS: Ruijie J Liu; Ana Teresa Maia ; Roslin Russell; Carlos Caldas; Bruce A Ponder; Matthew E Ritchie;
PUBLISHED: 2012, SOURCE: BIOINFORMATICS, VOLUME: 28, ISSUE: 8, PAGES: 1102-1108
267
TITLE: Chemically Modified Tetracyclines as Inhibitors of MMP-2 Matrix Metalloproteinase: A Molecular and Structural Study
AUTHORS: Bruna L Marcial; Sérgio F. Sousa ; Ingrid L Barbosa; Helio F Dos Santos; Maria J Ramos ;
PUBLISHED: 2012, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 116, ISSUE: 46, PAGES: 13644-13654
AUTHORS: Bruna L Marcial; Sérgio F. Sousa ; Ingrid L Barbosa; Helio F Dos Santos; Maria J Ramos ;
PUBLISHED: 2012, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 116, ISSUE: 46, PAGES: 13644-13654
268
TITLE: CompASM: an Amber-VMD alanine scanning mutagenesis plug-in Full Text
AUTHORS: Ribeiro, JV; Cerqueira, NMFSA ; Moreira, IS ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2012, SOURCE: THEORETICAL CHEMISTRY ACCOUNTS, VOLUME: 131, ISSUE: 10, PAGES: 1-7
AUTHORS: Ribeiro, JV; Cerqueira, NMFSA ; Moreira, IS ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2012, SOURCE: THEORETICAL CHEMISTRY ACCOUNTS, VOLUME: 131, ISSUE: 10, PAGES: 1-7
269
TITLE: Comprehensive investigation of genetic variation in the 8q24 region and multiple myeloma risk in the IMMEnSE consortium Full Text
AUTHORS: Daniele Campa; Alessandro Martino; Juan Sainz; Gabriele Buda; Krzysztof Jamroziak; Niels Weinhold; Rui Manuel V Vieira Reis ; Ramon Garcia Sanz; Manuel Jurado; Rafael Rios; Zofia Szemraj Rogucka; Herlander Marques ; Fabienne Lesueur; Peter Bugert; Victor Moreno; Janusz Szemraj; Enrico Orciuolo; Federica Gemignani; Anna Maria Rossi; Charles Dumontet; ...More
PUBLISHED: 2012, SOURCE: BRITISH JOURNAL OF HAEMATOLOGY, VOLUME: 157, ISSUE: 3, PAGES: 331-338
AUTHORS: Daniele Campa; Alessandro Martino; Juan Sainz; Gabriele Buda; Krzysztof Jamroziak; Niels Weinhold; Rui Manuel V Vieira Reis ; Ramon Garcia Sanz; Manuel Jurado; Rafael Rios; Zofia Szemraj Rogucka; Herlander Marques ; Fabienne Lesueur; Peter Bugert; Victor Moreno; Janusz Szemraj; Enrico Orciuolo; Federica Gemignani; Anna Maria Rossi; Charles Dumontet; ...More
PUBLISHED: 2012, SOURCE: BRITISH JOURNAL OF HAEMATOLOGY, VOLUME: 157, ISSUE: 3, PAGES: 331-338
270
TITLE: Computational enzymatic catalysis - clarifying enzymatic mechanisms with the help of computers Full Text
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2012, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 14, ISSUE: 36, PAGES: 12431-12441
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2012, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 14, ISSUE: 36, PAGES: 12431-12441
271
TITLE: Decomplexation and complexation of alkali metal cations by a crown-ether-type podand in dichloromethane: a steered molecular dynamics study Full Text
AUTHORS: Mario Valente; Sérgio F. Sousa ; Magalhaes, AL ; cristina freire ;
PUBLISHED: 2012, SOURCE: THEORETICAL CHEMISTRY ACCOUNTS, VOLUME: 131, ISSUE: 3, PAGES: 1-7
AUTHORS: Mario Valente; Sérgio F. Sousa ; Magalhaes, AL ; cristina freire ;
PUBLISHED: 2012, SOURCE: THEORETICAL CHEMISTRY ACCOUNTS, VOLUME: 131, ISSUE: 3, PAGES: 1-7
272
TITLE: Dehydration of a polyether type extraction agent and of the corresponding K+ complex: insights into liquid-liquid extraction mechanisms by quantum chemical methods Full Text
AUTHORS: Mario Valente; Sérgio F. Sousa ; Alexandre L Magalhaes ; cristina freire ;
PUBLISHED: 2012, SOURCE: JOURNAL OF MOLECULAR MODELING, VOLUME: 18, ISSUE: 11, PAGES: 4909-4915
AUTHORS: Mario Valente; Sérgio F. Sousa ; Alexandre L Magalhaes ; cristina freire ;
PUBLISHED: 2012, SOURCE: JOURNAL OF MOLECULAR MODELING, VOLUME: 18, ISSUE: 11, PAGES: 4909-4915
273
TITLE: Detection of the Epstein-Barr virus in blood and bone marrow mononuclear cells of patients with aggressive B-cell non-Hodgkin's lymphoma is not associated with prognosis
AUTHORS: Marques, H ; Catarino, R ; Domingues, N; Barros, E; Portela, C; Almeida, MI; Costa, S ; Reis, RM ; Rui Medeiros ; Longatto, A ;
PUBLISHED: 2012, SOURCE: ONCOLOGY LETTERS, VOLUME: 4, ISSUE: 6, PAGES: 1285-1289
AUTHORS: Marques, H ; Catarino, R ; Domingues, N; Barros, E; Portela, C; Almeida, MI; Costa, S ; Reis, RM ; Rui Medeiros ; Longatto, A ;
PUBLISHED: 2012, SOURCE: ONCOLOGY LETTERS, VOLUME: 4, ISSUE: 6, PAGES: 1285-1289
274
TITLE: Effects of BRCA2 cis-regulation in normal breast and cancer risk amongst BRCA2 mutation carriers
AUTHORS: Ana Teresa Maia ; Antonis C Antoniou; Martin O'Reilly; Shamith Samarajiwa; Mark Dunning; Christiana Kartsonaki; Suet Feung Chin; Christina N Curtis; Lesley McGuffog; Susan M Domchek; Douglas F Easton; Susan Peock; Debra Frost; Gareth G Evans; Ros Eeles; Louise Izatt; Julian Adlard; Diana Eccles; Olga M Sinilnikova; Sylvie Mazoyer; ...More
PUBLISHED: 2012, SOURCE: BREAST CANCER RESEARCH, VOLUME: 14, ISSUE: 2
AUTHORS: Ana Teresa Maia ; Antonis C Antoniou; Martin O'Reilly; Shamith Samarajiwa; Mark Dunning; Christiana Kartsonaki; Suet Feung Chin; Christina N Curtis; Lesley McGuffog; Susan M Domchek; Douglas F Easton; Susan Peock; Debra Frost; Gareth G Evans; Ros Eeles; Louise Izatt; Julian Adlard; Diana Eccles; Olga M Sinilnikova; Sylvie Mazoyer; ...More
PUBLISHED: 2012, SOURCE: BREAST CANCER RESEARCH, VOLUME: 14, ISSUE: 2
275
TITLE: Gemcitabine: A Critical Nucleoside for Cancer Therapy
AUTHORS: Gesto, DS; Cerqueira, NMFSA ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2012, SOURCE: CURRENT MEDICINAL CHEMISTRY, VOLUME: 19, ISSUE: 7, PAGES: 1076-1087
AUTHORS: Gesto, DS; Cerqueira, NMFSA ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2012, SOURCE: CURRENT MEDICINAL CHEMISTRY, VOLUME: 19, ISSUE: 7, PAGES: 1076-1087
276
TITLE: Genetics and molecular epidemiology of multiple myeloma: The rationale for the IMMEnSE consortium (Review)
AUTHORS: Alessandro Martino; Juan Sainz; Gabriele Buda; Krzysztof Jamroziak; Rui Manuel Reis ; Ramon Garcia Sanz; Manuel Jurado; Rafael Rios; Zofia Szemraj Rogucka; Herlander Marques ; Fabienne Lesueur; Victor Moreno; Enrico Orciuolo; Federica Gemignani; Stefano Landi; Anna Maria Rossi; Charles Dumontet; Mario Petrini; Daniele Campa; Federico Canzian;
PUBLISHED: 2012, SOURCE: INTERNATIONAL JOURNAL OF ONCOLOGY, VOLUME: 40, ISSUE: 3, PAGES: 625-638
AUTHORS: Alessandro Martino; Juan Sainz; Gabriele Buda; Krzysztof Jamroziak; Rui Manuel Reis ; Ramon Garcia Sanz; Manuel Jurado; Rafael Rios; Zofia Szemraj Rogucka; Herlander Marques ; Fabienne Lesueur; Victor Moreno; Enrico Orciuolo; Federica Gemignani; Stefano Landi; Anna Maria Rossi; Charles Dumontet; Mario Petrini; Daniele Campa; Federico Canzian;
PUBLISHED: 2012, SOURCE: INTERNATIONAL JOURNAL OF ONCOLOGY, VOLUME: 40, ISSUE: 3, PAGES: 625-638
277
TITLE: Glycosidases – A Mechanistic Overview
AUTHORS: Nuno Cerqueira ; Natrcia Brs; Maria Joo; Pedro Alexandrino;
PUBLISHED: 2012, SOURCE: Carbohydrates - Comprehensive Studies on Glycobiology and Glycotechnology
AUTHORS: Nuno Cerqueira ; Natrcia Brs; Maria Joo; Pedro Alexandrino;
PUBLISHED: 2012, SOURCE: Carbohydrates - Comprehensive Studies on Glycobiology and Glycotechnology
278
TITLE: Impact of polymorphic variation at 7p15.3, 3p22.1 and 2p23.3 loci on risk of multiple myeloma Full Text
AUTHORS: Alessandro Martino; Daniele Campa; Krzysztof Jamroziak; Rui Manuel Reis ; Juan Sainz; Gabriele Buda; Ramon Garcia Sanz; Fabienne Lesueur; Herlander Marques ; Victor Moreno; Manuel Jurado; Rafael Rios; Zofia Szemraj Rogucka; Janusz Szemraj; Anne Tjonneland; Kim Overvad; Annette Juul Vangsted; Ulla Vogel; Gabor Mikala; Katalin Kadar; ...More
PUBLISHED: 2012, SOURCE: BRITISH JOURNAL OF HAEMATOLOGY, VOLUME: 158, ISSUE: 6, PAGES: 805-809
AUTHORS: Alessandro Martino; Daniele Campa; Krzysztof Jamroziak; Rui Manuel Reis ; Juan Sainz; Gabriele Buda; Ramon Garcia Sanz; Fabienne Lesueur; Herlander Marques ; Victor Moreno; Manuel Jurado; Rafael Rios; Zofia Szemraj Rogucka; Janusz Szemraj; Anne Tjonneland; Kim Overvad; Annette Juul Vangsted; Ulla Vogel; Gabor Mikala; Katalin Kadar; ...More
PUBLISHED: 2012, SOURCE: BRITISH JOURNAL OF HAEMATOLOGY, VOLUME: 158, ISSUE: 6, PAGES: 805-809
279
TITLE: In silico Based Structural Analysis of Some Piperidine Analogs as Farnesyltransferase Inhibitors
AUTHORS: Narayana Subbiah Hari Narayana Moorthy ; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2012, SOURCE: MEDICINAL CHEMISTRY, VOLUME: 8, ISSUE: 5, PAGES: 853-864
AUTHORS: Narayana Subbiah Hari Narayana Moorthy ; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2012, SOURCE: MEDICINAL CHEMISTRY, VOLUME: 8, ISSUE: 5, PAGES: 853-864
280
TITLE: Polymorphisms in xenobiotic transporters ABCB1, ABCG2, ABCC2, ABCC1, ABCC3 and multiple myeloma risk: a case-control study in the context of the International Multiple Myeloma rESEarch (IMMEnSE) consortium Full Text
AUTHORS: Martino, A; Campa, D; Buda, G; Sainz, J; Garcia Sanz, R; Jamroziak, K; Reis, RM ; Weinhold, N; Jurado, M; Rios, R; Szemraj Rogucka, Z; Marques, H ; Szemraj, J; Stein, A; Kumar, R; Orciuolo, E; Gemignani, F; Landi, S; Goldschmidt, H; Petrini, M; ...More
PUBLISHED: 2012, SOURCE: LEUKEMIA, VOLUME: 26, ISSUE: 6, PAGES: 1419-1422
AUTHORS: Martino, A; Campa, D; Buda, G; Sainz, J; Garcia Sanz, R; Jamroziak, K; Reis, RM ; Weinhold, N; Jurado, M; Rios, R; Szemraj Rogucka, Z; Marques, H ; Szemraj, J; Stein, A; Kumar, R; Orciuolo, E; Gemignani, F; Landi, S; Goldschmidt, H; Petrini, M; ...More
PUBLISHED: 2012, SOURCE: LEUKEMIA, VOLUME: 26, ISSUE: 6, PAGES: 1419-1422
