Biomolecular Simulation (BioSIM)
Center for Health Technology and Services Research (CINTESIS) :: Clinical and Translational Research
AuthID: I-000-B6D
Publications Actions
Publications at Authenticus Institutional Profile
An Authenticus institution (group) is an organization which consists of a set of researchers (institutional/group team). The set of researchers depends on the organizational structure of the institution per year and can be set at the institution profile, under ‘Researchers’ interface. Based on the institutional team we produce listings of publications, statistics and institutional reports.
Publications displayed at an Authenticus institutional profile depend on two parameters:
- Researchers team associated with the institution per year.
- Publications source type.
We define 3 types of publication sources:
- Validated by team members - includes all publications validated by team members. Requires the definition of the institutional team.
- All published by team members - includes all publications validated by the institution team members plus all not-validated (only identified) publications. Requires the definition of the institutional team.
- Affiliation Based - includes publications that have the institution/group in the publication affiliation. Does not require institutional team, but at the same time does not guarantee that all publications will be listed.
External
Internal
No data about last update.
Rules:
This actions updates publications citations of every team member.
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
No data about last update.
Rules:
This actions updates all pre print publications of the group/institution.
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Publications Count: 432
8 Team MembersFilters -> Year: 2026
281
TITLE: The rs5743836 polymorphism in TLR9 confers a population-based increased risk of non-Hodgkin lymphoma Full Text
AUTHORS: Carvalho, A; Cunha, C; Almeida, AJ; Osorio, NS ; Saraiva, M ; Teixeira Coelho, M; Pedreiro, S; Torrado, E ; Domingues, N; Gomes Alves, AG; Marques, A; Lacerda, JF; da Silva, MG; Gomes, M; Pinto, AC; Torres, F; Rendeiro, P; Tavares, P; Di Ianni, M; Rui Medeiros ; ...More
PUBLISHED: 2012, SOURCE: GENES AND IMMUNITY, VOLUME: 13, ISSUE: 2, PAGES: 197-201
AUTHORS: Carvalho, A; Cunha, C; Almeida, AJ; Osorio, NS ; Saraiva, M ; Teixeira Coelho, M; Pedreiro, S; Torrado, E ; Domingues, N; Gomes Alves, AG; Marques, A; Lacerda, JF; da Silva, MG; Gomes, M; Pinto, AC; Torres, F; Rendeiro, P; Tavares, P; Di Ianni, M; Rui Medeiros ; ...More
PUBLISHED: 2012, SOURCE: GENES AND IMMUNITY, VOLUME: 13, ISSUE: 2, PAGES: 197-201
282
TITLE: Transfer of the K+ Cation Across a Water/Dichloromethane Interface: A Steered Molecular Dynamics Study with Implications in Cation Extraction
AUTHORS: Mario Valente; Sérgio F. Sousa ; Magalhaes, AL ; cristina freire ;
PUBLISHED: 2012, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 116, ISSUE: 6, PAGES: 1843-1849
AUTHORS: Mario Valente; Sérgio F. Sousa ; Magalhaes, AL ; cristina freire ;
PUBLISHED: 2012, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 116, ISSUE: 6, PAGES: 1843-1849
283
TITLE: A Functional Variant at a Prostate Cancer Predisposition Locus at 8q24 Is Associated with PVT1 Expression Full Text
AUTHORS: Kerstin B Meyer; Ana Teresa Maia ; Martin O'Reilly; Maya Ghoussaini; Radhika Prathalingam; Patricia Porter Gill; Stefan Ambs; Ludmila Prokunina Olsson; Jason Carroll; Bruce A J Ponder;
PUBLISHED: 2011, SOURCE: PLOS GENETICS, VOLUME: 7, ISSUE: 7
AUTHORS: Kerstin B Meyer; Ana Teresa Maia ; Martin O'Reilly; Maya Ghoussaini; Radhika Prathalingam; Patricia Porter Gill; Stefan Ambs; Ludmila Prokunina Olsson; Jason Carroll; Bruce A J Ponder;
PUBLISHED: 2011, SOURCE: PLOS GENETICS, VOLUME: 7, ISSUE: 7
284
TITLE: Complexation of alkali metal cations by crown-ether type podands with applications in solvent extraction: insights from quantum chemical calculations Full Text
AUTHORS: Mario Valente; Sérgio F. Sousa ; Alexandre L Magalhaes ; cristina freire ;
PUBLISHED: 2011, SOURCE: JOURNAL OF MOLECULAR MODELING, VOLUME: 17, ISSUE: 12, PAGES: 3275-3288
AUTHORS: Mario Valente; Sérgio F. Sousa ; Alexandre L Magalhaes ; cristina freire ;
PUBLISHED: 2011, SOURCE: JOURNAL OF MOLECULAR MODELING, VOLUME: 17, ISSUE: 12, PAGES: 3275-3288
285
TITLE: Computational Mechanistic Studies Addressed to the Transimination Reaction Present in All Pyridoxal 5 '-Phosphate-Requiring Enzymes Full Text
AUTHORS: Cerqueira, NMFSA ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2011, SOURCE: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, VOLUME: 7, ISSUE: 5, PAGES: 1356-1368
AUTHORS: Cerqueira, NMFSA ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2011, SOURCE: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, VOLUME: 7, ISSUE: 5, PAGES: 1356-1368
286
TITLE: Computational proteomics: from methodological developments to biological applications
AUTHORS: Irina S Moreira; Natercia F Bras ; Alexandra T P Carvalho; Nuno M F A Cerqueira; Daniel F Dourado; Marta A S Perez; Antonio J M Ribeiro; Sérgio F. Sousa ; Pedro A Fernandes; Maria J Ramos;
PUBLISHED: 2011, SOURCE: Quantal aspects in chemistry and physics: a tribute to the memory of Professor Couceiro da Costa, PAGES: 181-220
AUTHORS: Irina S Moreira; Natercia F Bras ; Alexandra T P Carvalho; Nuno M F A Cerqueira; Daniel F Dourado; Marta A S Perez; Antonio J M Ribeiro; Sérgio F. Sousa ; Pedro A Fernandes; Maria J Ramos;
PUBLISHED: 2011, SOURCE: Quantal aspects in chemistry and physics: a tribute to the memory of Professor Couceiro da Costa, PAGES: 181-220
INDEXED IN: 
CrossRef
CrossRef287
TITLE: Conversion from sirolimus to everolimus in kidney transplant recipients receiving a calcineurin-free regimen. Conversion from sirolimus to everolimus in kidney transplant recipients Full Text
AUTHORS: Catarina Carvalho; Luis Coentrao ; Manuela Bustorff; Emilia Patricio; Susana Sampaio ; Joana Santos; Gerardo Oliveira ; Manuel Pestana ;
PUBLISHED: 2011, SOURCE: CLINICAL TRANSPLANTATION, VOLUME: 25, ISSUE: 4
AUTHORS: Catarina Carvalho; Luis Coentrao ; Manuela Bustorff; Emilia Patricio; Susana Sampaio ; Joana Santos; Gerardo Oliveira ; Manuel Pestana ;
PUBLISHED: 2011, SOURCE: CLINICAL TRANSPLANTATION, VOLUME: 25, ISSUE: 4
288
TITLE: Detailed Atomistic Analysis of the HIV-1 Protease Interface
AUTHORS: Sérgio F. Sousa ; Bruno Tamames; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2011, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 115, ISSUE: 21, PAGES: 7045-7057
AUTHORS: Sérgio F. Sousa ; Bruno Tamames; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2011, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 115, ISSUE: 21, PAGES: 7045-7057
289
TITLE: Detection of Farnesyltransferase Interface Hot Spots through Computational Alanine Scanning Mutagenesis
AUTHORS: Marta A S Perez; Sérgio F. Sousa ; Eduardo F T Oliveira; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2011, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 115, ISSUE: 51, PAGES: 15339-15354
AUTHORS: Marta A S Perez; Sérgio F. Sousa ; Eduardo F T Oliveira; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2011, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 115, ISSUE: 51, PAGES: 15339-15354
290
TITLE: In Silico-Based Structural Analysis of Arylthiophene Derivatives for FTase Inhibitory Activity, hERG, and Other Toxic Effects
AUTHORS: Hari S H N Narayana Moorthy ; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2011, SOURCE: JOURNAL OF BIOMOLECULAR SCREENING, VOLUME: 16, ISSUE: 9, PAGES: 1037-1046
AUTHORS: Hari S H N Narayana Moorthy ; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2011, SOURCE: JOURNAL OF BIOMOLECULAR SCREENING, VOLUME: 16, ISSUE: 9, PAGES: 1037-1046
291
TITLE: Mechanism of Formation of the Internal Aldimine in Pyridoxal 5 '-Phosphate-Dependent Enzymes Full Text
AUTHORS: Eduardo F Oliveira; Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2011, SOURCE: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, VOLUME: 133, ISSUE: 39, PAGES: 15496-15505
AUTHORS: Eduardo F Oliveira; Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2011, SOURCE: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, VOLUME: 133, ISSUE: 39, PAGES: 15496-15505
292
TITLE: Organs Transplantation - How to Improve the Process?
AUTHORS: Ferraz, V; Oliveira, G ; Viera Marques, P ; Cruz Correia, R ;
PUBLISHED: 2011, SOURCE: 23 rd Conference of the European Federation of Medical Informatics (MIE) in USER CENTRED NETWORKED HEALTH CARE, VOLUME: 169, PAGES: 300-304
AUTHORS: Ferraz, V; Oliveira, G ; Viera Marques, P ; Cruz Correia, R ;
PUBLISHED: 2011, SOURCE: 23 rd Conference of the European Federation of Medical Informatics (MIE) in USER CENTRED NETWORKED HEALTH CARE, VOLUME: 169, PAGES: 300-304
293
TITLE: Structural feature study of benzofuran derivatives as farnesyltransferase inhibitors Full Text
AUTHORS: Hari Narayana H N Moorthy ; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2011, SOURCE: JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, VOLUME: 26, ISSUE: 6, PAGES: 777-791
AUTHORS: Hari Narayana H N Moorthy ; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2011, SOURCE: JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, VOLUME: 26, ISSUE: 6, PAGES: 777-791
294
TITLE: The mechanism of formate oxidation by metal-dependent formate dehydrogenases
AUTHORS: Mota, CS; Rivas, MG; Brondino, CD; Moura, I ; Moura, JJG ; Gonzalez, PJ; Cerqueira, NMFSA ;
PUBLISHED: 2011, SOURCE: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, VOLUME: 16, ISSUE: 8, PAGES: 1255-1268
AUTHORS: Mota, CS; Rivas, MG; Brondino, CD; Moura, I ; Moura, JJG ; Gonzalez, PJ; Cerqueira, NMFSA ;
PUBLISHED: 2011, SOURCE: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, VOLUME: 16, ISSUE: 8, PAGES: 1255-1268
295
TITLE: vsLab-An Implementation for Virtual High-Throughput Screening Using AutoDock and VMD Full Text
AUTHORS: Cerqueira, NMFSA ; Ribeiro, J; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2011, SOURCE: 4th International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 111, ISSUE: 6, PAGES: 1208-1212
AUTHORS: Cerqueira, NMFSA ; Ribeiro, J; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2011, SOURCE: 4th International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 111, ISSUE: 6, PAGES: 1208-1212
296
TITLE: XM-ONE Detection of Endothelium Cell Antibodies Identifies a Subgroup of HLA-Antibody Negative Patients Undergoing Acute Rejection Full Text
AUTHORS: Xavier, P; Aires, P; Sampaio, S; Mendes, C; Monteiro, M; Alves, H; Oliveira, G ;
PUBLISHED: 2011, SOURCE: 9th Luso Brazilian Congress of Transplant in TRANSPLANTATION PROCEEDINGS, VOLUME: 43, ISSUE: 1, PAGES: 91-94
AUTHORS: Xavier, P; Aires, P; Sampaio, S; Mendes, C; Monteiro, M; Alves, H; Oliveira, G ;
PUBLISHED: 2011, SOURCE: 9th Luso Brazilian Congress of Transplant in TRANSPLANTATION PROCEEDINGS, VOLUME: 43, ISSUE: 1, PAGES: 91-94
297
TITLE: A comparative molecular dynamics study on the complexation of alkali metal cations by a poly-ethylene-glycol type podand in water and in dichloromethane Full Text
AUTHORS: Mario Valente; Sérgio F. Sousa ; Magalhaes, AL ; cristina freire ;
PUBLISHED: 2010, SOURCE: 9th National Meeting of Physical Chemistry in JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, VOLUME: 946, ISSUE: 1-3, PAGES: 77-82
AUTHORS: Mario Valente; Sérgio F. Sousa ; Magalhaes, AL ; cristina freire ;
PUBLISHED: 2010, SOURCE: 9th National Meeting of Physical Chemistry in JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, VOLUME: 946, ISSUE: 1-3, PAGES: 77-82
298
TITLE: Association of adult mastocytosis with M541L in the transmembrane domain of KIT Full Text
AUTHORS: Rocha, J; Luz Duarte, ML; Marques, H ; Torres, F; Tavares, P; Silva, A; Brito, C;
PUBLISHED: 2010, SOURCE: JOURNAL OF THE EUROPEAN ACADEMY OF DERMATOLOGY AND VENEREOLOGY, VOLUME: 24, ISSUE: 9, PAGES: 1118-1119
AUTHORS: Rocha, J; Luz Duarte, ML; Marques, H ; Torres, F; Tavares, P; Silva, A; Brito, C;
PUBLISHED: 2010, SOURCE: JOURNAL OF THE EUROPEAN ACADEMY OF DERMATOLOGY AND VENEREOLOGY, VOLUME: 24, ISSUE: 9, PAGES: 1118-1119
299
TITLE: Cerebral coccidioidomycosis after renal transplantation in a non-endemic area Full Text
AUTHORS: Carvalho, C; Ferreira, I; Gaiao, S ; Guimaraes, S; Costa, R; Santos, J; Sampaio, S ; Bustorff, M; Oliveira, G ; Pestana, M ;
PUBLISHED: 2010, SOURCE: TRANSPLANT INFECTIOUS DISEASE, VOLUME: 12, ISSUE: 2, PAGES: 151-154
AUTHORS: Carvalho, C; Ferreira, I; Gaiao, S ; Guimaraes, S; Costa, R; Santos, J; Sampaio, S ; Bustorff, M; Oliveira, G ; Pestana, M ;
PUBLISHED: 2010, SOURCE: TRANSPLANT INFECTIOUS DISEASE, VOLUME: 12, ISSUE: 2, PAGES: 151-154
300
TITLE: Common germ-line polymorphism of C1QA and breast cancer survival Full Text
AUTHORS: Azzato, EM; Lee, AJX; Teschendorff, A; Ponder, BAJ; Pharoah, P; Caldas, C; Maia, AT ;
PUBLISHED: 2010, SOURCE: BRITISH JOURNAL OF CANCER, VOLUME: 102, ISSUE: 8, PAGES: 1294-1299
AUTHORS: Azzato, EM; Lee, AJX; Teschendorff, A; Ponder, BAJ; Pharoah, P; Caldas, C; Maia, AT ;
PUBLISHED: 2010, SOURCE: BRITISH JOURNAL OF CANCER, VOLUME: 102, ISSUE: 8, PAGES: 1294-1299
