Biomolecular Simulation (BioSIM)
Center for Health Technology and Services Research (CINTESIS) :: Clinical and Translational Research
AuthID: I-000-B6D
Publications Actions
Publications at Authenticus Institutional Profile
An Authenticus institution (group) is an organization which consists of a set of researchers (institutional/group team). The set of researchers depends on the organizational structure of the institution per year and can be set at the institution profile, under ‘Researchers’ interface. Based on the institutional team we produce listings of publications, statistics and institutional reports.
Publications displayed at an Authenticus institutional profile depend on two parameters:
- Researchers team associated with the institution per year.
- Publications source type.
We define 3 types of publication sources:
- Validated by team members - includes all publications validated by team members. Requires the definition of the institutional team.
- All published by team members - includes all publications validated by the institution team members plus all not-validated (only identified) publications. Requires the definition of the institutional team.
- Affiliation Based - includes publications that have the institution/group in the publication affiliation. Does not require institutional team, but at the same time does not guarantee that all publications will be listed.
External
Internal
No data about last update.
Rules:
This actions updates publications citations of every team member.
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
No data about last update.
Rules:
This actions updates all pre print publications of the group/institution.
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Publications Count: 436
8 Team MembersFilters -> Year: 2026
341
TITLE: Molecular determinants of ligand specificity in family 11 carbohydrate binding modules - an NMR, X-ray crystallography and computational chemistry approach. Determinants of ligand specificity in CtCBM11 Full Text
AUTHORS: Aldino Viegas; Natercia F Bras ; Nuno M F S A Cerqueira ; Pedro Alexandrino Fernandes ; Jose A M Prates ; Carlos M G A Fontes ; Marta Bruix; Maria Joao Romao ; Ana Luisa Carvalho ; Maria Joao Ramos ; Anjos L Macedo; Eurico J Cabrita ;
PUBLISHED: 2008, SOURCE: FEBS JOURNAL, VOLUME: 275, ISSUE: 10, PAGES: 2524-2535
AUTHORS: Aldino Viegas; Natercia F Bras ; Nuno M F S A Cerqueira ; Pedro Alexandrino Fernandes ; Jose A M Prates ; Carlos M G A Fontes ; Marta Bruix; Maria Joao Romao ; Ana Luisa Carvalho ; Maria Joao Ramos ; Anjos L Macedo; Eurico J Cabrita ;
PUBLISHED: 2008, SOURCE: FEBS JOURNAL, VOLUME: 275, ISSUE: 10, PAGES: 2524-2535
342
TITLE: Molecular dynamics analysis of farnesyltransferase: A closer look into the amino acid behavior Full Text
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: 3rd International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 108, ISSUE: 11, PAGES: 1939-1950
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: 3rd International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 108, ISSUE: 11, PAGES: 1939-1950
343
TITLE: Periplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenum
AUTHORS: Najmudin, S ; Gonzalez, PJ; Trincao, J; Coelho, C; Mukhopadhyay, A; Cerqueira, NMFSA ; Romao, CC ; Moura, I ; Moura, JJG ; Brondino, CD; Romao, MJ ;
PUBLISHED: 2008, SOURCE: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, VOLUME: 13, ISSUE: 5, PAGES: 737-753
AUTHORS: Najmudin, S ; Gonzalez, PJ; Trincao, J; Coelho, C; Mukhopadhyay, A; Cerqueira, NMFSA ; Romao, CC ; Moura, I ; Moura, JJG ; Brondino, CD; Romao, MJ ;
PUBLISHED: 2008, SOURCE: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, VOLUME: 13, ISSUE: 5, PAGES: 737-753
344
TITLE: Somatically acquired hypomethylation of IGF2 in breast and colorectal cancer
AUTHORS: Yoko Ito; Thibaud Koessler; Ashraf E K Ibrahim; Sushma Rai; Sarah L Vowler; Sayeda Abu Amero; Ana Luisa Silva; Ana Teresa Maia ; Joanna E Huddleston; Santiago Uribe Lewis; Kathryn Woodfine; Maja Jagodic; Raffaella Nativio; Alison Dunning; Gudrun Moore; Elena Klenova; Sheila Bingham; Paul D P Pharoah; James D Brenton; Stephan Beck; ...More
PUBLISHED: 2008, SOURCE: HUMAN MOLECULAR GENETICS, VOLUME: 17, ISSUE: 17, PAGES: 2633-2643
AUTHORS: Yoko Ito; Thibaud Koessler; Ashraf E K Ibrahim; Sushma Rai; Sarah L Vowler; Sayeda Abu Amero; Ana Luisa Silva; Ana Teresa Maia ; Joanna E Huddleston; Santiago Uribe Lewis; Kathryn Woodfine; Maja Jagodic; Raffaella Nativio; Alison Dunning; Gudrun Moore; Elena Klenova; Sheila Bingham; Paul D P Pharoah; James D Brenton; Stephan Beck; ...More
PUBLISHED: 2008, SOURCE: HUMAN MOLECULAR GENETICS, VOLUME: 17, ISSUE: 17, PAGES: 2633-2643
345
TITLE: Synthesis of N-aryl-5-amino-4-cyanopyrazole derivatives as potent xanthine oxidase inhibitors Full Text
AUTHORS: Sanjay Gupta; Ligia M Rodrigues; Ana P Esteves ; Ana M F Oliveira Campos; Nascimento, MSJ ; Nazareth, N; Honorina Cidade ; Marta P Neves; Eduarda Fernandes ; Madalena Pinto ; Nuno M F S A Cerqueira ; Natercia Bras ;
PUBLISHED: 2008, SOURCE: EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, VOLUME: 43, ISSUE: 4, PAGES: 771-780
AUTHORS: Sanjay Gupta; Ligia M Rodrigues; Ana P Esteves ; Ana M F Oliveira Campos; Nascimento, MSJ ; Nazareth, N; Honorina Cidade ; Marta P Neves; Eduarda Fernandes ; Madalena Pinto ; Nuno M F S A Cerqueira ; Natercia Bras ;
PUBLISHED: 2008, SOURCE: EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, VOLUME: 43, ISSUE: 4, PAGES: 771-780
346
TITLE: Analysis of zinc-ligand bond lengths in metalloproteins: Trends and patterns Full Text
AUTHORS: Bruno Tamames; Sérgio F. Sousa ; Juan Tamames; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, VOLUME: 69, ISSUE: 3, PAGES: 466-475
AUTHORS: Bruno Tamames; Sérgio F. Sousa ; Juan Tamames; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, VOLUME: 69, ISSUE: 3, PAGES: 466-475
347
TITLE: Antiviral drug-induced nephrotoxicity [Nefrotoxicidade dos antivíricos]
AUTHORS: Neto, R ; Oliveira, G ; Pestana, M ;
PUBLISHED: 2007, SOURCE: Acta Medica Portuguesa, VOLUME: 20, ISSUE: 1, PAGES: 59-63
AUTHORS: Neto, R ; Oliveira, G ; Pestana, M ;
PUBLISHED: 2007, SOURCE: Acta Medica Portuguesa, VOLUME: 20, ISSUE: 1, PAGES: 59-63
INDEXED IN: 
Scopus
Scopus348
TITLE: Common germline genetic variation in antioxidant defense genes and survival after diagnosis of breast cancer
AUTHORS: Miriam Udler; Ana Teresa Maia ; Arancha Cebrian; Clement Brown; David Greenberg; Mitul Shah; Carlos Caldas; Alison Dunning; Douglas Easton; Bruce Ponder; Paul Pharoah;
PUBLISHED: 2007, SOURCE: JOURNAL OF CLINICAL ONCOLOGY, VOLUME: 25, ISSUE: 21, PAGES: 3015-3023
AUTHORS: Miriam Udler; Ana Teresa Maia ; Arancha Cebrian; Clement Brown; David Greenberg; Mitul Shah; Carlos Caldas; Alison Dunning; Douglas Easton; Bruce Ponder; Paul Pharoah;
PUBLISHED: 2007, SOURCE: JOURNAL OF CLINICAL ONCOLOGY, VOLUME: 25, ISSUE: 21, PAGES: 3015-3023
349
TITLE: Comparative assessment of theoretical methods for the determination of geometrical properties in biological zinc complexes
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 111, ISSUE: 30, PAGES: 9146-9152
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 111, ISSUE: 30, PAGES: 9146-9152
350
TITLE: CXCL9 and CXCL10 synthesis is down-regulated by anti-IL-2 alpha chain receptor antibody (IL-2RAb) therapy in kidney transplants (KTx) Full Text
AUTHORS: Paula D P Xavier; Jose G Oliveira ; Susana M M S Norton ; Carla A R S Araujo ; Helena Alves; Manuel J V Pestana;
PUBLISHED: 2007, SOURCE: TRANSPLANT INTERNATIONAL, VOLUME: 20, PAGES: 125-126
AUTHORS: Paula D P Xavier; Jose G Oliveira ; Susana M M S Norton ; Carla A R S Araujo ; Helena Alves; Manuel J V Pestana;
PUBLISHED: 2007, SOURCE: TRANSPLANT INTERNATIONAL, VOLUME: 20, PAGES: 125-126
INDEXED IN: 
WOS
WOS351
TITLE: CXCL9 and CXCL10 synthesis is down-regulated by anti-IL-2-alpha chain receptor antibody therapy in kidney transplants
AUTHORS: Jose Oliveira ; Paula Xavier; Susana Sampaio norton; Carla Santos araujo; Helena Alves; Manuel Pestana;
PUBLISHED: 2007, SOURCE: 44th ERA-EDTA Congress in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 22, PAGES: 10-10
AUTHORS: Jose Oliveira ; Paula Xavier; Susana Sampaio norton; Carla Santos araujo; Helena Alves; Manuel Pestana;
PUBLISHED: 2007, SOURCE: 44th ERA-EDTA Congress in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 22, PAGES: 10-10
INDEXED IN: WOS
WOS352
TITLE: CXCL9 and CXCL10 synthesis is down-regulated by anti-IL-2alpha chain receptor antibody (IL-2RAb) therapy in Kidney Transplants (KTx) Full Text
AUTHORS: Xavier, PDP; Oliveira, JGG ; Sampaio Norton, SMM ; Santos Araujo, CAR ; Alves, H; Pestana, MJV;
PUBLISHED: 2007, SOURCE: 21st European Immunogenetics and Histocompatibility Conference in TISSUE ANTIGENS, VOLUME: 69, ISSUE: 5, PAGES: 398-398
AUTHORS: Xavier, PDP; Oliveira, JGG ; Sampaio Norton, SMM ; Santos Araujo, CAR ; Alves, H; Pestana, MJV;
PUBLISHED: 2007, SOURCE: 21st European Immunogenetics and Histocompatibility Conference in TISSUE ANTIGENS, VOLUME: 69, ISSUE: 5, PAGES: 398-398
INDEXED IN: WOS
WOS353
TITLE: Effective tailor-made force field parameterization of the several Zn coordination environments in the puzzling FTase enzyme: opening the door to the full understanding of its elusive catalytic mechanism Full Text
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: THEORETICAL CHEMISTRY ACCOUNTS, VOLUME: 117, ISSUE: 1, PAGES: 171-181
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: THEORETICAL CHEMISTRY ACCOUNTS, VOLUME: 117, ISSUE: 1, PAGES: 171-181
354
TITLE: General performance of density functionals
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY A, VOLUME: 111, ISSUE: 42, PAGES: 10439-10452
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY A, VOLUME: 111, ISSUE: 42, PAGES: 10439-10452
355
TITLE: Postrenal transplantation body composition: Different evolution depending on gender
AUTHORS: Andreia S P S Coroas; Jose G G de Oliveira ; Susana M M Sampaio ; Isabel C Tavares ; Manuel Pestana ; Maria D V Almeida ;
PUBLISHED: 2007, SOURCE: JOURNAL OF RENAL NUTRITION, VOLUME: 17, ISSUE: 2, PAGES: 151-156
AUTHORS: Andreia S P S Coroas; Jose G G de Oliveira ; Susana M M Sampaio ; Isabel C Tavares ; Manuel Pestana ; Maria D V Almeida ;
PUBLISHED: 2007, SOURCE: JOURNAL OF RENAL NUTRITION, VOLUME: 17, ISSUE: 2, PAGES: 151-156
356
TITLE: Ribonucleotide reductase: A critical enzyme for cancer chemotherapy and antiviral agents
AUTHORS: Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2007, SOURCE: RECENT PATENTS ON ANTI-CANCER DRUG DISCOVERY, VOLUME: 2, ISSUE: 1, PAGES: 11-29
AUTHORS: Nuno M F S A Cerqueira ; Pedro A Fernandes ; Maria J Ramos ;
PUBLISHED: 2007, SOURCE: RECENT PATENTS ON ANTI-CANCER DRUG DISCOVERY, VOLUME: 2, ISSUE: 1, PAGES: 11-29
357
TITLE: The carboxylate shift in zinc enzymes: A computational study Full Text
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, VOLUME: 129, ISSUE: 5, PAGES: 1378-1385
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, VOLUME: 129, ISSUE: 5, PAGES: 1378-1385
358
TITLE: Theoretical studies on farnesyltransferase: Evidence for thioether product coordination to the active-site zinc sphere Full Text
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF COMPUTATIONAL CHEMISTRY, VOLUME: 28, ISSUE: 7, PAGES: 1160-1168
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: JOURNAL OF COMPUTATIONAL CHEMISTRY, VOLUME: 28, ISSUE: 7, PAGES: 1160-1168
359
TITLE: Theoretical studies on farnesyltransferase: The distances paradox explained Full Text
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, VOLUME: 66, ISSUE: 1, PAGES: 205-218
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2007, SOURCE: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, VOLUME: 66, ISSUE: 1, PAGES: 205-218
360
TITLE: Toll-Like receptor (TLR) protein changes in kidney transplant (KTX) biopsies (FNAB) among patients treated with anti-2alpha chain receptor antibody (II-2RAB) Full Text
AUTHORS: Oliveira, JGG ; Xavier, PDP; Sampaio Norton, SMM ; Santos Araujo, CAR; Alves, H; Pestana, MJV;
PUBLISHED: 2007, SOURCE: 21st European Immunogenetics and Histocompatibility Conference in TISSUE ANTIGENS, VOLUME: 69, ISSUE: 5, PAGES: 380-380
AUTHORS: Oliveira, JGG ; Xavier, PDP; Sampaio Norton, SMM ; Santos Araujo, CAR; Alves, H; Pestana, MJV;
PUBLISHED: 2007, SOURCE: 21st European Immunogenetics and Histocompatibility Conference in TISSUE ANTIGENS, VOLUME: 69, ISSUE: 5, PAGES: 380-380
INDEXED IN: WOS
WOS