Biomolecular Simulation (BioSIM)
Center for Health Technology and Services Research (CINTESIS) :: Clinical and Translational Research
AuthID: I-000-B6D
Publications Actions
Publications at Authenticus Institutional Profile
An Authenticus institution (group) is an organization which consists of a set of researchers (institutional/group team). The set of researchers depends on the organizational structure of the institution per year and can be set at the institution profile, under ‘Researchers’ interface. Based on the institutional team we produce listings of publications, statistics and institutional reports.
Publications displayed at an Authenticus institutional profile depend on two parameters:
- Researchers team associated with the institution per year.
- Publications source type.
We define 3 types of publication sources:
- Validated by team members - includes all publications validated by team members. Requires the definition of the institutional team.
- All published by team members - includes all publications validated by the institution team members plus all not-validated (only identified) publications. Requires the definition of the institutional team.
- Affiliation Based - includes publications that have the institution/group in the publication affiliation. Does not require institutional team, but at the same time does not guarantee that all publications will be listed.
External
Internal
No data about last update.
Rules:
This actions updates publications citations of every team member.
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
No data about last update.
Rules:
This actions updates all pre print publications of the group/institution.
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Publications Count: 432
8 Team MembersFilters -> Year: 2026
121
TITLE: (3S,4R)-3,4-Dihydroxy-N-alkyl-l-homoprolines: synthesis and computational mechanistic studies Full Text
AUTHORS: Freitas, DS; Sousa, CEA; Parente, J; Drogalin, A; Fortes, AG; Cerqueira, NMFSA ; Alves, MJ;
PUBLISHED: 2019, SOURCE: ORGANIC & BIOMOLECULAR CHEMISTRY, VOLUME: 17, ISSUE: 47, PAGES: 10052-10064
AUTHORS: Freitas, DS; Sousa, CEA; Parente, J; Drogalin, A; Fortes, AG; Cerqueira, NMFSA ; Alves, MJ;
PUBLISHED: 2019, SOURCE: ORGANIC & BIOMOLECULAR CHEMISTRY, VOLUME: 17, ISSUE: 47, PAGES: 10052-10064
122
TITLE: Allele-specific miRNA-binding analysis identifies candidate target genes for breast cancer risk
AUTHORS: Ana Jacinta-Fernandes; Joana M Xavier; Ramiro Magno; Joel G Lage; Ana-Teresa Maia ;
PUBLISHED: 2019
AUTHORS: Ana Jacinta-Fernandes; Joana M Xavier; Ramiro Magno; Joel G Lage; Ana-Teresa Maia ;
PUBLISHED: 2019
INDEXED IN: 
CrossRef
CrossRef123
TITLE: Alternative splicing regulation by GWAS risk loci for breast cancer
AUTHORS: Juliana Machado; Ramiro Magno; Joana M Xavier; Ana-Teresa Maia ;
PUBLISHED: 2019
AUTHORS: Juliana Machado; Ramiro Magno; Joana M Xavier; Ana-Teresa Maia ;
PUBLISHED: 2019
124
TITLE: Brain functional connectivity is altered in patients with Takotsubo Syndrome Full Text
AUTHORS: Silva, AR; Magalhaes, R; Arantes, C; Moreira, PS; Rodrigues, M; Marques, P; Marques, J ; Sousa, N; Pereira, VH;
PUBLISHED: 2019, SOURCE: SCIENTIFIC REPORTS, VOLUME: 9, ISSUE: 1
AUTHORS: Silva, AR; Magalhaes, R; Arantes, C; Moreira, PS; Rodrigues, M; Marques, P; Marques, J ; Sousa, N; Pereira, VH;
PUBLISHED: 2019, SOURCE: SCIENTIFIC REPORTS, VOLUME: 9, ISSUE: 1
125
TITLE: Clinical significance of metabolism-related biomarkers in non-Hodgkin lymphoma-MCT1 as potential target in diffuse large B cell lymphoma
AUTHORS: Afonso, J; Pinto, T; Simoes Sousa, S; Schmitt, F ; Longatto, A ; Pinheiro, C; Marques, H ; Baltazar, F ;
PUBLISHED: 2019, SOURCE: CELLULAR ONCOLOGY, VOLUME: 42, ISSUE: 3, PAGES: 303-318
AUTHORS: Afonso, J; Pinto, T; Simoes Sousa, S; Schmitt, F ; Longatto, A ; Pinheiro, C; Marques, H ; Baltazar, F ;
PUBLISHED: 2019, SOURCE: CELLULAR ONCOLOGY, VOLUME: 42, ISSUE: 3, PAGES: 303-318
126
TITLE: Comparing AutoDock and Vina in Ligand/Decoy Discrimination for Virtual Screening
AUTHORS: Vieira, TF; Sérgio F. Sousa ;
PUBLISHED: 2019, SOURCE: APPLIED SCIENCES-BASEL, VOLUME: 9, ISSUE: 21, PAGES: 4538
AUTHORS: Vieira, TF; Sérgio F. Sousa ;
PUBLISHED: 2019, SOURCE: APPLIED SCIENCES-BASEL, VOLUME: 9, ISSUE: 21, PAGES: 4538
127
TITLE: Differences for T-Cell Subtypes in Aspiration Biopsies of Patients With Kidney Transplant Under Polyclonal and Monoclonal I mmunosuppressive Treatments Full Text
AUTHORS: Xavier, P; Magalhaes, M; Sampaio Norton, S ; Guimaraes, T ; Oliveira, JG ;
PUBLISHED: 2019, SOURCE: TRANSPLANTATION PROCEEDINGS, VOLUME: 51, ISSUE: 10, PAGES: 3271-3274
AUTHORS: Xavier, P; Magalhaes, M; Sampaio Norton, S ; Guimaraes, T ; Oliveira, JG ;
PUBLISHED: 2019, SOURCE: TRANSPLANTATION PROCEEDINGS, VOLUME: 51, ISSUE: 10, PAGES: 3271-3274
128
TITLE: EFFECTS OF STATINS THERAPY ON LDL SUBFRACTIONS AND INFLAMMATION, IN END-STAGE RENAL DISEASE PATIENTS ON DIALYSIS
AUTHORS: Susana Coimbra ; Flavio Reis; Sara Nunes; Sofia Viana; Maria Joao Valente; Susana Rocha; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1
AUTHORS: Susana Coimbra ; Flavio Reis; Sara Nunes; Sofia Viana; Maria Joao Valente; Susana Rocha; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1
INDEXED IN: 
WOS CrossRef
WOS CrossRef129
TITLE: Evaluation of Scoring Functions for Large Scale Application of Virtual Screening in the Identification of Novel Beta-Lactamase Inhibitors
AUTHORS: Vieira, TF; Magalhaes, RP; Cerqueira, NMFSA ; Sérgio F. Sousa ;
PUBLISHED: 2019, SOURCE: 6th IEEE Portuguese Meeting on Bioengineering (ENBENG) in 2019 6TH IEEE PORTUGUESE MEETING IN BIOENGINEERING (ENBENG)
AUTHORS: Vieira, TF; Magalhaes, RP; Cerqueira, NMFSA ; Sérgio F. Sousa ;
PUBLISHED: 2019, SOURCE: 6th IEEE Portuguese Meeting on Bioengineering (ENBENG) in 2019 6TH IEEE PORTUGUESE MEETING IN BIOENGINEERING (ENBENG)
130
TITLE: Formation of Unstable and very Reactive Chemical Species Catalyzed by Metalloenzymes: A Mechanistic Overview Full Text
AUTHORS: Fernandes, HS ; Teixeira, CSS; Sérgio F. Sousa ; Cerqueira, NMFSA ;
PUBLISHED: 2019, SOURCE: MOLECULES, VOLUME: 24, ISSUE: 13, PAGES: 2462
AUTHORS: Fernandes, HS ; Teixeira, CSS; Sérgio F. Sousa ; Cerqueira, NMFSA ;
PUBLISHED: 2019, SOURCE: MOLECULES, VOLUME: 24, ISSUE: 13, PAGES: 2462
131
TITLE: Genetic polymorphisms in genes of class switch recombination and multiple myeloma risk and survival: an IMMEnSE study
AUTHORS: Campa, D; Martino, A; Macauda, A; Dudzinski, M; Suska, A; Druzd Sitek, A; Raab, MS; Moreno, V; Huhn, S; Butrym, A; Sainz, J; Szombath, G; Rymko, M; Marques, H ; Lesueur, F; Vangsted, AJ; Vogel, U; Kruszewski, M; Subocz, E; Buda, G; ...More
PUBLISHED: 2019, SOURCE: LEUKEMIA & LYMPHOMA, VOLUME: 60, ISSUE: 7, PAGES: 1803-1811
AUTHORS: Campa, D; Martino, A; Macauda, A; Dudzinski, M; Suska, A; Druzd Sitek, A; Raab, MS; Moreno, V; Huhn, S; Butrym, A; Sainz, J; Szombath, G; Rymko, M; Marques, H ; Lesueur, F; Vangsted, AJ; Vogel, U; Kruszewski, M; Subocz, E; Buda, G; ...More
PUBLISHED: 2019, SOURCE: LEUKEMIA & LYMPHOMA, VOLUME: 60, ISSUE: 7, PAGES: 1803-1811
132
TITLE: Hepcidin and diabetes are independently related with soluble transferrin receptor levels in chronic dialysis patients Full Text
AUTHORS: Luis Belo ; Susana Rocha; Maria Joao Valente; Susana Coimbra ; Cristina Catarino ; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Petronila Rocha Pereira; Maria do Sameiro Faria; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Vasco Miranda; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: RENAL FAILURE, VOLUME: 41, ISSUE: 1, PAGES: 662-672
AUTHORS: Luis Belo ; Susana Rocha; Maria Joao Valente; Susana Coimbra ; Cristina Catarino ; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Petronila Rocha Pereira; Maria do Sameiro Faria; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Vasco Miranda; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: RENAL FAILURE, VOLUME: 41, ISSUE: 1, PAGES: 662-672
133
TITLE: Human Fatty Acid Synthase: A Computational Study of the Transfer of the Acyl Moieties from MAT to the ACP Domain Full Text
AUTHORS: Pedro Paiva ; Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2019, SOURCE: CHEMCATCHEM, VOLUME: 11, ISSUE: 16, PAGES: 3853-3864
AUTHORS: Pedro Paiva ; Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2019, SOURCE: CHEMCATCHEM, VOLUME: 11, ISSUE: 16, PAGES: 3853-3864
134
TITLE: INFLAMMATION AND CELL-FREE DNA AS BIOMARKERS FOR THE OUTCOME OF END STAGE RENAL DISEASE PATIENTS
AUTHORS: Susana Rocha; Henrique Nascimento; Maria Joao Valente; Susana Coimbra ; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Cristina Catarino ; Petronila Rocha Pereira; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1
AUTHORS: Susana Rocha; Henrique Nascimento; Maria Joao Valente; Susana Coimbra ; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Cristina Catarino ; Petronila Rocha Pereira; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1
INDEXED IN: WOS CrossRef
WOS CrossRef135
TITLE: Long Pentraxin 3 as a Broader Biomarker for Multiple Risk Factors in End-Stage Renal Disease: Association with All-Cause Mortality Full Text
AUTHORS: Maria Joao Valente; Susana Rocha; Susana Coimbra ; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: MEDIATORS OF INFLAMMATION, VOLUME: 2019, PAGES: 1-12
AUTHORS: Maria Joao Valente; Susana Rocha; Susana Coimbra ; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: MEDIATORS OF INFLAMMATION, VOLUME: 2019, PAGES: 1-12
136
TITLE: MACHINE LEARNING IN PREDICTION OF VULNERABLE OR RESILIENT END-STAGE RENAL DISEASE PATIENTS
AUTHORS: Joao Pedro Pedroso; Maria Joao Valente; Susana Rocha; Susana Coimbra ; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Marcia Carvalho ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1, PAGES: 580-580
AUTHORS: Joao Pedro Pedroso; Maria Joao Valente; Susana Rocha; Susana Coimbra ; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Marcia Carvalho ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1, PAGES: 580-580
INDEXED IN: WOS CrossRef
WOS CrossRef137
TITLE: Molecular dynamic simulations and QM/MM studies addressed to build an active Tryptophan Synthase model. A critical enzyme to treat tuberculosis
AUTHORS: Teixeira, CSS; Sérgio F. Sousa ; Cerqueira, NMFSA ;
PUBLISHED: 2019, SOURCE: 6th IEEE Portuguese Meeting on Bioengineering (ENBENG) in 2019 6TH IEEE PORTUGUESE MEETING IN BIOENGINEERING (ENBENG)
AUTHORS: Teixeira, CSS; Sérgio F. Sousa ; Cerqueira, NMFSA ;
PUBLISHED: 2019, SOURCE: 6th IEEE Portuguese Meeting on Bioengineering (ENBENG) in 2019 6TH IEEE PORTUGUESE MEETING IN BIOENGINEERING (ENBENG)
138
TITLE: New insights about the monomer and homodimer structures of the human AOX1 Full Text
AUTHORS: Ferreira, P; Cerqueira, NMFSA ; Coelho, C; Fernandes, PA ; Romao, MJ; Ramos, MJ ;
PUBLISHED: 2019, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 21, ISSUE: 25, PAGES: 13545-13554
AUTHORS: Ferreira, P; Cerqueira, NMFSA ; Coelho, C; Fernandes, PA ; Romao, MJ; Ramos, MJ ;
PUBLISHED: 2019, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 21, ISSUE: 25, PAGES: 13545-13554
139
TITLE: PENTRAXIN 3 IN END-STAGE RENAL DISEASE: MULTIPLE RISK BIOMARKER AND PREDICTOR OF ALL-CAUSE MORTALITY
AUTHORS: Maria Joao Valente; Susana Rocha; Susana Coimbra ; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1
AUTHORS: Maria Joao Valente; Susana Rocha; Susana Coimbra ; Cristina Catarino ; Petronila Rocha Pereira; Bronze-da-Rocha E; Bronze E; Bronze-Rocha E ; Jose Gerardo Oliveira ; Jose Madureira; Joao Carlos Fernandes; Maria Do Sameiro Faria; Vasco Miranda; Luis Belo ; Alice Santos-Silva ;
PUBLISHED: 2019, SOURCE: 56th Congress of the European-Renal-Association (ERA)-European-Dialysis-and-Transplant-Association (EDTA) - Burden, Access and Disparities in Kidney Disease in NEPHROLOGY DIALYSIS TRANSPLANTATION, VOLUME: 34, ISSUE: Supplement_1
INDEXED IN: WOS CrossRef
WOS CrossRef140
TITLE: PLP-dependent enzymes as important biocatalysts for the pharmaceutical, chemical and food industries: a structural and mechanistic perspective
AUTHORS: Rocha, JF; Pina, AF; Sérgio F. Sousa ; Cerqueira, NMFSA ;
PUBLISHED: 2019, SOURCE: CATALYSIS SCIENCE & TECHNOLOGY, VOLUME: 9, ISSUE: 18, PAGES: 4864-4876
AUTHORS: Rocha, JF; Pina, AF; Sérgio F. Sousa ; Cerqueira, NMFSA ;
PUBLISHED: 2019, SOURCE: CATALYSIS SCIENCE & TECHNOLOGY, VOLUME: 9, ISSUE: 18, PAGES: 4864-4876
