11
TITLE: A primer on microbial bioinformatics for nonbioinformaticians
AUTHORS: Carrico, JA; Rossi, M; Moran Gilad, J; Van Domselaar, G; Ramirez, M ;
PUBLISHED: 2018, SOURCE: CLINICAL MICROBIOLOGY AND INFECTION, VOLUME: 24, ISSUE: 4
INDEXED IN: WOS CrossRef: 44
12
TITLE: chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
AUTHORS: Silva, M; Machado, MP; Silva, DN; Rossi, M; Moran Gilad, J; Santos, S; Ramirez, M ; Carrico, JA;
PUBLISHED: 2018, SOURCE: MICROBIAL GENOMICS, VOLUME: 4, ISSUE: 3
INDEXED IN: WOS CrossRef: 161
13
TITLE: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
AUTHORS: Couto, N; Schuele, L; Raangs, EC; Machado, MP; Mendes, CI; Jesus, TF; Chlebowicz, M; Rosema, S; Ramirez, M ; Carrico, JA; Autenrieth, IB; Friedrich, AW; Peter, S; Rossen, JW;
PUBLISHED: 2018, SOURCE: SCIENTIFIC REPORTS, VOLUME: 8, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 48
14
TITLE: Increasing macrolide resistance among <i>Streptococcus</i> <i>agalactiae</i> causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 to 2015
AUTHORS: Lopes, E; Fernandes, T; Machado, MP; Carriço, JA; Mello Cristino, J; Ramirez, M ; Martins, ER;
PUBLISHED: 2018, SOURCE: EUROSURVEILLANCE, VOLUME: 23, ISSUE: 21
INDEXED IN: Scopus WOS CrossRef: 37
15
TITLE: Pediatric Complicated Pneumonia Caused by <i>Streptococcus pneumoniae</i> Serotype 3 in 13-Valent Pneumococcal Conjugate Vaccinees, Portugal, 2010-2015
AUTHORS: Silva Costa, C; Brito, MJ; Pinho, MD; Friaes, A; Aguiar, SI; Ramirez, M ; Melo Cristino, J ;
PUBLISHED: 2018, SOURCE: EMERGING INFECTIOUS DISEASES, VOLUME: 24, ISSUE: 7
INDEXED IN: WOS
16
TITLE: Streptococcus pyogenes Causing Skin and Soft Tissue Infections Are Enriched in the Recently Emerged emm89 Clade 3 and Are Not Associated With Abrogation of CovRS
AUTHORS: Pato, C; Melo Cristino, J ; Ramirez, M ; Friaes, A;
PUBLISHED: 2018, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 9, ISSUE: OCT
INDEXED IN: Scopus WOS CrossRef: 9
17
TITLE: A widespread family of polymorphic toxins encoded by temperate phages
AUTHORS: Jamet, A; Touchon, M; Ribeiro Goncalves, B; Carrico, JA; Charbit, A; Nassif, X; Ramirez, M ; Rocha, EPC;
PUBLISHED: 2017, SOURCE: BMC BIOLOGY, VOLUME: 15, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 33
18
TITLE: Clonal and serotype dynamics of serogroup 6 isolates causing invasive pneumococcal disease in Portugal: 1999-2012
AUTHORS: Diamantino Miranda, J; Aguiar, SI; Carrico, JA; Melo Cristino, J ; Ramirez, M ;
PUBLISHED: 2017, SOURCE: PLOS ONE, VOLUME: 12, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef: 8
19
TITLE: PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
AUTHORS: Nascimento, M; Sousa, A; Ramirez, M ; Francisco, AP ; Carriço, JA; Vaz, C;
PUBLISHED: 2017, SOURCE: BIOINFORMATICS, VOLUME: 33, ISSUE: 1
INDEXED IN: Scopus WOS DBLP CrossRef: 268
20
TITLE: Streptococcus agalactiae Causing Neonatal Infections in Portugal (2005-2015): Diversification and Emergence of a CC17/PI-2b Multidrug Resistant Sublineage  Full Text
AUTHORS: Martins, ER; Pedroso Roussado, C; Melo Cristino, J ; Ramirez, M ; Oliveira, H; Vaz, T; Gião, M; Ferreira, R; Silva, AC; Costa, H; Silva, MF; Afonso, MA; Domingos, A; Marrão, G; Grossinho, J; Lopes, P; Felício, L; Lameirão, A; Mota Vieira, AP; Tomaz, M; Ramos, MH; Castro, AP; Canhoto, N; Afonso, T; Pinto, M; Chantre, O; Marques, J; Peres, I; Daniel, I; Canas, E; Ferreira, T; Marcelo, C; Monteiro, L; Lito, LM; Martins, F; Pessanha, MA; Gonçalves, E; Morais, T; Marques, T; Toscano, C; Ribeiro, G; Tomé, R; Pontes, C; Boaventura, L; Chaves, C; Reis, T; Fonseca, AB; Ribeiro, M; Gonçalves, H; Faustino, A; Alves, A; Iglesias, MC; Cabral, L; Neto, O; Sancho, L; Coutinho, A; Diogo, J; Rodrigues, A; Nascimento, I; Ramalheira, E; Bessa, F; Diaz, R; Read, MA; Alves, V; Monteiro, M; Rodrigues, V; Pereira, P; Paixão, P; ...More
PUBLISHED: 2017, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 8, ISSUE: MAR
INDEXED IN: Scopus WOS
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