Nuno Miguel Rodrigues Pascoal Faria
AuthID: R-000-QMZ
1
TITLE: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance
AUTHORS: Xianding D Deng; Asmeeta Achari; Scot Federman; Guixia X Yu; Sneha Somasekar; Ines Bartolo; Shigeo Yagi; Placide Mbala Kingebeni; Jimmy Kapetshi; Steve Ahuka Mundeke; Jean Jacques Muyembe Tamfum; Asim A Ahmed; Vijay Ganesh; Manasi Tamhankar; Jean L Patterson; Nicaise Ndembi; Dora Mbanya; Lazare Kaptue; Carole McArthur; Jose E Munoz Medina; ...More
PUBLISHED: 2020, SOURCE: NATURE MICROBIOLOGY, VOLUME: 5, ISSUE: 3
AUTHORS: Xianding D Deng; Asmeeta Achari; Scot Federman; Guixia X Yu; Sneha Somasekar; Ines Bartolo; Shigeo Yagi; Placide Mbala Kingebeni; Jimmy Kapetshi; Steve Ahuka Mundeke; Jean Jacques Muyembe Tamfum; Asim A Ahmed; Vijay Ganesh; Manasi Tamhankar; Jean L Patterson; Nicaise Ndembi; Dora Mbanya; Lazare Kaptue; Carole McArthur; Jose E Munoz Medina; ...More
PUBLISHED: 2020, SOURCE: NATURE MICROBIOLOGY, VOLUME: 5, ISSUE: 3
INDEXED IN: Scopus WOS
2
TITLE: A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes Full Text
AUTHORS: Vagner Fonseca; Pieter J K Libin; Kristof Theys; Nuno R Faria; Marcio R T Nunes; Maria I Restovic; Murilo Freire; Marta Giovanetti; Lize Cuypers; Ann Nowe; Ana Abecasis; Koen Deforche; Gilberto A Santiago; Isadora C de Siqueira; Emmanuel J San; Kaliane C B Machado; Vasco Azevedo; Ana Maria Bispo de Filippis; Rivaldo Venancio da Cunha; Oliver G Pybus; ...More
PUBLISHED: 2019, SOURCE: PLOS NEGLECTED TROPICAL DISEASES, VOLUME: 13, ISSUE: 5
AUTHORS: Vagner Fonseca; Pieter J K Libin; Kristof Theys; Nuno R Faria; Marcio R T Nunes; Maria I Restovic; Murilo Freire; Marta Giovanetti; Lize Cuypers; Ann Nowe; Ana Abecasis; Koen Deforche; Gilberto A Santiago; Isadora C de Siqueira; Emmanuel J San; Kaliane C B Machado; Vasco Azevedo; Ana Maria Bispo de Filippis; Rivaldo Venancio da Cunha; Oliver G Pybus; ...More
PUBLISHED: 2019, SOURCE: PLOS NEGLECTED TROPICAL DISEASES, VOLUME: 13, ISSUE: 5
INDEXED IN: Scopus WOS
3
TITLE: Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology
AUTHORS: Tetyana I Vasylyeva; Louis du Plessis; Andrea C Pineda Pena; Denise Kuehnert; Philippe Lemey; Anne Mieke Vandamme; Perpetua Gomes; Ricardo J Camacho; Oliver G Pybus; Ana B Abecasis; Nuno R Faria;
PUBLISHED: 2019, SOURCE: JOURNAL OF INFECTIOUS DISEASES, VOLUME: 220, ISSUE: 2
AUTHORS: Tetyana I Vasylyeva; Louis du Plessis; Andrea C Pineda Pena; Denise Kuehnert; Philippe Lemey; Anne Mieke Vandamme; Perpetua Gomes; Ricardo J Camacho; Oliver G Pybus; Ana B Abecasis; Nuno R Faria;
PUBLISHED: 2019, SOURCE: JOURNAL OF INFECTIOUS DISEASES, VOLUME: 220, ISSUE: 2
INDEXED IN: Scopus WOS
4
TITLE: Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa Full Text
AUTHORS: Nuno R Faria; Nicole Vidal; Jose Lourenco; Jayna Raghwani; Kim C E Sigaloff; Andy J Tatem; David A M van de Vijver; Andrea Clemencia Pineda Pena; Rebecca Rose; Carole L Wallis; Steve Ahuka Mundeke; Jean Jacques Muyembe Tamfum; Jeremie Muwonga; Marc A Suchard; Tobias Rinke R de Wit; Raph L Hamers; Nicaise Ndembi; Guy Baele; Martine Peeters; Oliver G Pybus; ...More
PUBLISHED: 2019, SOURCE: PLOS PATHOGENS, VOLUME: 15, ISSUE: 12
AUTHORS: Nuno R Faria; Nicole Vidal; Jose Lourenco; Jayna Raghwani; Kim C E Sigaloff; Andy J Tatem; David A M van de Vijver; Andrea Clemencia Pineda Pena; Rebecca Rose; Carole L Wallis; Steve Ahuka Mundeke; Jean Jacques Muyembe Tamfum; Jeremie Muwonga; Marc A Suchard; Tobias Rinke R de Wit; Raph L Hamers; Nicaise Ndembi; Guy Baele; Martine Peeters; Oliver G Pybus; ...More
PUBLISHED: 2019, SOURCE: PLOS PATHOGENS, VOLUME: 15, ISSUE: 12
INDEXED IN: WOS
5
TITLE: Spread of yellow fever virus outbreak in Angola and the Democratic Republic of the Congo 2015-16: a modelling study Full Text
AUTHORS: Moritz U G Kraemer; Nuno R Faria; Robert C Reiner; Nick Golding; Birgit Nikolay; Stephanie Stasse; Michael A Johansson; Henrik Salje; Ousmane Faye; William R W Wint; Matthias Niedrig; Freya M Shearer; Sarah C Hill; Robin N Thompson; Donal Bisanzio; Nuno Taveira; Heinrich H Nax; Bary S R Pradelski; Elaine O Nsoesie; Nicholas R Murphy; ...More
PUBLISHED: 2017, SOURCE: LANCET INFECTIOUS DISEASES, VOLUME: 17, ISSUE: 3
AUTHORS: Moritz U G Kraemer; Nuno R Faria; Robert C Reiner; Nick Golding; Birgit Nikolay; Stephanie Stasse; Michael A Johansson; Henrik Salje; Ousmane Faye; William R W Wint; Matthias Niedrig; Freya M Shearer; Sarah C Hill; Robin N Thompson; Donal Bisanzio; Nuno Taveira; Heinrich H Nax; Bary S R Pradelski; Elaine O Nsoesie; Nicholas R Murphy; ...More
PUBLISHED: 2017, SOURCE: LANCET INFECTIOUS DISEASES, VOLUME: 17, ISSUE: 3
INDEXED IN: WOS
6
TITLE: An integrated map of HIV genome-wide variation from a population perspective Full Text
AUTHORS: Guangdi D Li; Supinya Piampongsant; Nuno Rodrigues Faria; Arnout Voet; Andrea Clemencia Pineda Pena; Ricardo Khouri; Philippe Lemey; Anne Mieke Vandamme; Kristof Theys;
PUBLISHED: 2015, SOURCE: RETROVIROLOGY, VOLUME: 12, ISSUE: 1
AUTHORS: Guangdi D Li; Supinya Piampongsant; Nuno Rodrigues Faria; Arnout Voet; Andrea Clemencia Pineda Pena; Ricardo Khouri; Philippe Lemey; Anne Mieke Vandamme; Kristof Theys;
PUBLISHED: 2015, SOURCE: RETROVIROLOGY, VOLUME: 12, ISSUE: 1
INDEXED IN: WOS CrossRef
7
TITLE: Epidemiological history and genomic characterization of non-D1 HBV strains identified in Iran (vol 63, pg 38, 2015) Full Text
AUTHORS: Andrea Clemencia Pineda Pena; Nuno Rodrigues Faria; Thomas Mina; Samad Amini Bavil Olyaee; Seyed Moayed Alavian; Philippe Lemey; Piet Maes; Marc Van Ranst; Mahmoud Reza Pourkarim;
PUBLISHED: 2015, SOURCE: JOURNAL OF CLINICAL VIROLOGY, VOLUME: 69
AUTHORS: Andrea Clemencia Pineda Pena; Nuno Rodrigues Faria; Thomas Mina; Samad Amini Bavil Olyaee; Seyed Moayed Alavian; Philippe Lemey; Piet Maes; Marc Van Ranst; Mahmoud Reza Pourkarim;
PUBLISHED: 2015, SOURCE: JOURNAL OF CLINICAL VIROLOGY, VOLUME: 69
INDEXED IN: WOS
8
TITLE: Corrigendum to “Epidemiological history and genomic characterization of non-D1 HBV strains identified in Iran”[J. Clin. Virol. 63 (2015) 38–41] Full Text
AUTHORS: Andrea-Clemencia Pineda-Peña; Nuno Rodrigues Faria; Thomas Mina; Samad Amini-Bavil-Olyaee; Seyed Moayed Alavian; Philippe Lemey; Piet Maes; Marc Van Ranst; Mahmoud Reza Pourkarim;
PUBLISHED: 2015, SOURCE: Journal of Clinical Virology, VOLUME: 69
AUTHORS: Andrea-Clemencia Pineda-Peña; Nuno Rodrigues Faria; Thomas Mina; Samad Amini-Bavil-Olyaee; Seyed Moayed Alavian; Philippe Lemey; Piet Maes; Marc Van Ranst; Mahmoud Reza Pourkarim;
PUBLISHED: 2015, SOURCE: Journal of Clinical Virology, VOLUME: 69
INDEXED IN: CrossRef
9
TITLE: The early spread and epidemic ignition of HIV-1 in human populations
AUTHORS: Nuno R Faria; Andrew Rambaut; Marc A Suchard; Guy Baele; Trevor Bedford; Melissa J Ward; Andrew J Tatem; Joao D Sousa; Nimalan Arinaminpathy; Jacques Pepin; David Posada; Martine Peeters; Oliver G Pybus; Philippe Lemey;
PUBLISHED: 2014, SOURCE: SCIENCE, VOLUME: 346, ISSUE: 6205
AUTHORS: Nuno R Faria; Andrew Rambaut; Marc A Suchard; Guy Baele; Trevor Bedford; Melissa J Ward; Andrew J Tatem; Joao D Sousa; Nimalan Arinaminpathy; Jacques Pepin; David Posada; Martine Peeters; Oliver G Pybus; Philippe Lemey;
PUBLISHED: 2014, SOURCE: SCIENCE, VOLUME: 346, ISSUE: 6205
10
TITLE: Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools Full Text
AUTHORS: Andrea-Clemencia Pineda-Peña; Nuno Rodrigues Faria; Stijn Imbrechts; Pieter Libin; Ana Barroso Abecasis; Koen Deforche; Arley Gómez-López; Ricardo J Camacho; Tulio de Oliveira; Anne-Mieke Vandamme;
PUBLISHED: 2013, SOURCE: Infection, Genetics and Evolution, VOLUME: 19
AUTHORS: Andrea-Clemencia Pineda-Peña; Nuno Rodrigues Faria; Stijn Imbrechts; Pieter Libin; Ana Barroso Abecasis; Koen Deforche; Arley Gómez-López; Ricardo J Camacho; Tulio de Oliveira; Anne-Mieke Vandamme;
PUBLISHED: 2013, SOURCE: Infection, Genetics and Evolution, VOLUME: 19
INDEXED IN: CrossRef