John Archer
AuthID: R-00H-AFF
11
TITLE: Quantification of the effects of chimerism on read mapping, differential expression and annotation following short-read de novo assembly.
AUTHORS: Raquel Linheiro; John Archer;
PUBLISHED: 2022, SOURCE: F1000Research, VOLUME: 11
AUTHORS: Raquel Linheiro; John Archer;
PUBLISHED: 2022, SOURCE: F1000Research, VOLUME: 11
12
TITLE: A non-lethal method for studying scorpion venom gland transcriptomes, with a review of potentially suitable taxa to which it can be applied
AUTHORS: Vonk, FJ; Bittenbinder, MA; Kerkkamp, HMI; Grashof, DGB; Archer, JP; Afonso, S; Richardson, MK; Kool, J; van der Meijden, A;
PUBLISHED: 2021, SOURCE: PLOS ONE, VOLUME: 16, ISSUE: 11
AUTHORS: Vonk, FJ; Bittenbinder, MA; Kerkkamp, HMI; Grashof, DGB; Archer, JP; Afonso, S; Richardson, MK; Kool, J; van der Meijden, A;
PUBLISHED: 2021, SOURCE: PLOS ONE, VOLUME: 16, ISSUE: 11
13
TITLE: CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure
AUTHORS: Linheiro, R; Archer, J;
PUBLISHED: 2021, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 17, ISSUE: 11
AUTHORS: Linheiro, R; Archer, J;
PUBLISHED: 2021, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 17, ISSUE: 11
14
TITLE: Transcriptome annotation and characterization of novel toxins in six scorpion species Full Text
AUTHORS: Grashof, DGB; Kerkkamp, HMI; Afonso, S; Archer, J; Harris, DJ ; Richardson, MK; Vonk, FJ; van der Meijden, A;
PUBLISHED: 2019, SOURCE: BMC GENOMICS, VOLUME: 20, ISSUE: 1
AUTHORS: Grashof, DGB; Kerkkamp, HMI; Afonso, S; Archer, J; Harris, DJ ; Richardson, MK; Vonk, FJ; van der Meijden, A;
PUBLISHED: 2019, SOURCE: BMC GENOMICS, VOLUME: 20, ISSUE: 1
15
TITLE: Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus
AUTHORS: Carneiro, M ; Hu, D; Archer, J; Feng, CG; Afonso, S; Chen, CY; Blanco Aguiar, JA; Garreau, H; Boucher, S; Ferreira, PG; Ferrand, N ; Rubin, CJ; Andersson, L;
PUBLISHED: 2017, SOURCE: GENETICS, VOLUME: 205, ISSUE: 2
AUTHORS: Carneiro, M ; Hu, D; Archer, J; Feng, CG; Afonso, S; Chen, CY; Blanco Aguiar, JA; Garreau, H; Boucher, S; Ferreira, PG; Ferrand, N ; Rubin, CJ; Andersson, L;
PUBLISHED: 2017, SOURCE: GENETICS, VOLUME: 205, ISSUE: 2
16
TITLE: Lorenzo-Redondo et al. reply
AUTHORS: Lorenzo Redondo, R; Fryer, HR; Bedford, T; Kim, EY; Archer, J; Pond, SLK; Chung, YS; Penugonda, S; Chipman, JG; Fletcher, CV; Schacker, TW; Malim, MH; Rambaut, A; Haase, AT; McLean, AR; Wolinsky, SM;
PUBLISHED: 2017, SOURCE: Nature, VOLUME: 551, ISSUE: 7681
AUTHORS: Lorenzo Redondo, R; Fryer, HR; Bedford, T; Kim, EY; Archer, J; Pond, SLK; Chung, YS; Penugonda, S; Chipman, JG; Fletcher, CV; Schacker, TW; Malim, MH; Rambaut, A; Haase, AT; McLean, AR; Wolinsky, SM;
PUBLISHED: 2017, SOURCE: Nature, VOLUME: 551, ISSUE: 7681
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TITLE: Lorenzo-Redondo et al. reply
AUTHORS: Ramon Lorenzo-Redondo; Helen R Fryer; Trevor Bedford; Eun-Young Kim; John Archer; Sergei Kosakovsky K Pond; Yoon-Seok Chung; Sudhir Penugonda; Jeffrey G Chipman; Courtney V Fletcher; Timothy W Schacker; Michael H Malim; Andrew Rambaut; Ashley T Haase; Angela R McLean; Steven M Wolinsky;
PUBLISHED: 2017, SOURCE: Nature, VOLUME: 551, ISSUE: 7681
AUTHORS: Ramon Lorenzo-Redondo; Helen R Fryer; Trevor Bedford; Eun-Young Kim; John Archer; Sergei Kosakovsky K Pond; Yoon-Seok Chung; Sudhir Penugonda; Jeffrey G Chipman; Courtney V Fletcher; Timothy W Schacker; Michael H Malim; Andrew Rambaut; Ashley T Haase; Angela R McLean; Steven M Wolinsky;
PUBLISHED: 2017, SOURCE: Nature, VOLUME: 551, ISSUE: 7681
18
TITLE: VTBuilder: A tool for the assembly of multi isoform transcriptomes
AUTHORS: John Archer; Gareth Whiteley; Nicholas R Casewell; Robert A Harrison; Simon C Wagstaff;
PUBLISHED: 2014, SOURCE: BMC Bioinformatics, VOLUME: 15, ISSUE: 1
AUTHORS: John Archer; Gareth Whiteley; Nicholas R Casewell; Robert A Harrison; Simon C Wagstaff;
PUBLISHED: 2014, SOURCE: BMC Bioinformatics, VOLUME: 15, ISSUE: 1
19
TITLE: Human APOBEC3 Induced Mutation of Human Immunodeficiency Virus Type-1 Contributes to Adaptation and Evolution in Natural Infection
AUTHORS: Eun Young Kim; Ramon Lorenzo Redondo; Susan J Little; Yoon Seok Chung; Prabhjeet K Phalora; Irina Maljkovic Berry; John Archer; Sudhir Penugonda; Will Fischer; Douglas D Richman; Tanmoy Bhattacharya; Michael H Malim; Steven M Wolinsky;
PUBLISHED: 2014, SOURCE: PLoS Pathogens, VOLUME: 10, ISSUE: 7
AUTHORS: Eun Young Kim; Ramon Lorenzo Redondo; Susan J Little; Yoon Seok Chung; Prabhjeet K Phalora; Irina Maljkovic Berry; John Archer; Sudhir Penugonda; Will Fischer; Douglas D Richman; Tanmoy Bhattacharya; Michael H Malim; Steven M Wolinsky;
PUBLISHED: 2014, SOURCE: PLoS Pathogens, VOLUME: 10, ISSUE: 7
20
TITLE: Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism
AUTHORS: Richard M Gibson; Ashley M Meyer; Dane Winner; John Archer; Felix Feyertag; Ezequiel Ruiz Mateos; Manuel Leal; David L Robertson; Christine L Schmotzer; Miguel E Quiñones Mateu;
PUBLISHED: 2014, SOURCE: Antimicrobial Agents and Chemotherapy, VOLUME: 58, ISSUE: 4
AUTHORS: Richard M Gibson; Ashley M Meyer; Dane Winner; John Archer; Felix Feyertag; Ezequiel Ruiz Mateos; Manuel Leal; David L Robertson; Christine L Schmotzer; Miguel E Quiñones Mateu;
PUBLISHED: 2014, SOURCE: Antimicrobial Agents and Chemotherapy, VOLUME: 58, ISSUE: 4
