11
TITLE: Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.)
AUTHORS: Filipe Sousa; Foster, PG; Donoghue, PCJ; Schneider, H; Cox, CJ;
PUBLISHED: 2019, SOURCE: NEW PHYTOLOGIST, VOLUME: 222, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 87
IN MY: ORCID
12
TITLE: Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)
AUTHORS: Jonna S Eriksson; Filipe Sousa; Yann J K Bertrand; Alexandre Antonelli; Bengt Oxelman; Bernard E Pfeil;
PUBLISHED: 2018, SOURCE: BMC Evolutionary Biology, VOLUME: 18, ISSUE: 1
INDEXED IN: Scopus CrossRef: 30
IN MY: ORCID
13
TITLE: The use of chloroplast genome sequences to solve phylogenetic incongruences in Polystachya Hook (Orchidaceae Juss)
AUTHORS: Narjara Lopes de Abreu; Ruy José Válka Alves; Sérgio Ricardo Sodré Cardoso; Yann J K Bertrand; Filipe Sousa; Climbiê Ferreira Hall; Bernard E Pfeil; Alexandre Antonelli;
PUBLISHED: 2018, SOURCE: Peerj, VOLUME: 2018, ISSUE: 6
INDEXED IN: Scopus CrossRef: 15
IN MY: ORCID
14
TITLE: Using Genomic Location and Coalescent Simulation to Investigate Gene Tree Discordance in Medicago L.
AUTHORS: Filipe Sousa; Bertrand, YJK; Doyle, JJ; Oxelman, B; Pfeil, BE;
PUBLISHED: 2017, SOURCE: SYSTEMATIC BIOLOGY, VOLUME: 66, ISSUE: 6
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
15
TITLE: A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae)  Full Text
AUTHORS: Eriksson J.S.; Blanco-Pastor J.L.; Filipe Sousa; Bertrand Y.J.K.; Pfeil B.E.;
PUBLISHED: 2017, SOURCE: Molecular Phylogenetics and Evolution, VOLUME: 107
INDEXED IN: Scopus CrossRef: 14
IN MY: ORCID
16
TITLE: Patterns of phylogenetic incongruence in Medicago found among six loci
AUTHORS: Filipe Sousa; Yann J K Bertrand; Bernard E Pfeil;
PUBLISHED: 2016, SOURCE: Plant Systematics and Evolution, VOLUME: 302, ISSUE: 5
INDEXED IN: Scopus CrossRef: 17
IN MY: ORCID
17
TITLE: Assignment of Homoeologs to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae)  Full Text
AUTHORS: Yann J K Bertrand; Anne Cathrine Scheen; Thomas Marcussen; Bernard E Pfeil; Filipe Sousa; Bengt Oxelman;
PUBLISHED: 2015, SOURCE: SYSTEMATIC BIOLOGY, VOLUME: 64, ISSUE: 3
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
18
TITLE: A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts
AUTHORS: Henrik H Nilsson; Leho Tedersoo; Martin Ryberg; Erik Kristiansson; Martin Hartmann; Martin Unterseher; Teresita M Porter; Johan Bengtsson Palme; Donald M Walker; Filipe Sousa; Hannes Andres Gamper; Ellen Larsson; Karl Henrik Larsson; Urmas Koljalg; Robert C Edgar; Kessy Abarenkov;
PUBLISHED: 2015, SOURCE: MICROBES AND ENVIRONMENTS, VOLUME: 30, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
19
TITLE: Phylogenetic Properties of 50 Nuclear Loci in Medicago (Leguminosae) Generated Using Multiplexed Sequence Capture and Next-Generation Sequencing  Full Text
AUTHORS: Filipe Sousa; Yann J K Bertrand; Stephan Nylinder; Bengt Oxelman; Jonna S Eriksson; Bernard E Pfeil;
PUBLISHED: 2014, SOURCE: PLOS ONE, VOLUME: 9, ISSUE: 10
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
20
TITLE: Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data  Full Text
AUTHORS: Johan Bengtsson-Palme; Martin Ryberg; Martin Hartmann; Sara Branco; Zheng Wang; Anna Godhe; Pierre De Wit; Marisol Sánchez-García; Ingo Ebersberger; Filipe Sousa; Anthony S Amend; Ari Jumpponen; Martin Unterseher; Erik Kristiansson; Kessy Abarenkov; Yann J K Bertrand; Kemal Sanli; Martin M Eriksson; Unni Vik; Vilmar Veldre; Henrik H Nilsson; ...More
PUBLISHED: 2013, SOURCE: Methods in Ecology and Evolution
INDEXED IN: CrossRef
IN MY: ORCID
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