Ana Chambel da Silva Carriço
AuthID: R-000-6RP
31
TITLE: A primer on microbial bioinformatics for nonbioinformaticians Full Text
AUTHORS: Carrico, JA; Rossi, M; Moran Gilad, J; Van Domselaar, G; Ramirez, M;
PUBLISHED: 2018, SOURCE: CLINICAL MICROBIOLOGY AND INFECTION, VOLUME: 24, ISSUE: 4
AUTHORS: Carrico, JA; Rossi, M; Moran Gilad, J; Van Domselaar, G; Ramirez, M;
PUBLISHED: 2018, SOURCE: CLINICAL MICROBIOLOGY AND INFECTION, VOLUME: 24, ISSUE: 4
INDEXED IN: 
WOS
WOS32
TITLE: chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
AUTHORS: Mickael Silva; Miguel P Machado; Diogo N Silva; Mirko Rossi; Jacob Moran Gilad; Sergio Santos; Mario Ramirez; Joao Andre Carrico;
PUBLISHED: 2018, SOURCE: MICROBIAL GENOMICS, VOLUME: 4, ISSUE: 3
AUTHORS: Mickael Silva; Miguel P Machado; Diogo N Silva; Mirko Rossi; Jacob Moran Gilad; Sergio Santos; Mario Ramirez; Joao Andre Carrico;
PUBLISHED: 2018, SOURCE: MICROBIAL GENOMICS, VOLUME: 4, ISSUE: 3
INDEXED IN: WOS
WOS33
TITLE: Large-Scale Simulations of Bacterial Populations Over Complex Networks
AUTHORS: Teixeira, AS ; Monteiro, PT; Carrico, JA; Santos, FC ; Francisco, AP ;
PUBLISHED: 2018, SOURCE: JOURNAL OF COMPUTATIONAL BIOLOGY, VOLUME: 25, ISSUE: 8
AUTHORS: Teixeira, AS ; Monteiro, PT; Carrico, JA; Santos, FC ; Francisco, AP ;
PUBLISHED: 2018, SOURCE: JOURNAL OF COMPUTATIONAL BIOLOGY, VOLUME: 25, ISSUE: 8
34
TITLE: GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
AUTHORS: Zhemin M Zhou; Nabil Fareed Alikhan; Martin J Sergeant; Nina Luhmann; Catia Vaz; Alexandre P Francisco ; Joao Andre Carrico; Mark Achtman;
PUBLISHED: 2018, SOURCE: GENOME RESEARCH, VOLUME: 28, ISSUE: 9
AUTHORS: Zhemin M Zhou; Nabil Fareed Alikhan; Martin J Sergeant; Nina Luhmann; Catia Vaz; Alexandre P Francisco ; Joao Andre Carrico; Mark Achtman;
PUBLISHED: 2018, SOURCE: GENOME RESEARCH, VOLUME: 28, ISSUE: 9
INDEXED IN: 
Scopus WOS
Scopus WOS35
TITLE: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens Full Text
AUTHORS: Natacha Couto; Leonard Schuele; Erwin C Raangs; Miguel P Machado; Catarina I Mendes; Tiago F Jesus; Monika Chlebowicz; Sigrid Rosema; Mario Ramirez; Joao A Carrico; Ingo B Autenrieth; Alex W Friedrich; Silke Peter; John W Rossen;
PUBLISHED: 2018, SOURCE: SCIENTIFIC REPORTS, VOLUME: 8, ISSUE: 1
AUTHORS: Natacha Couto; Leonard Schuele; Erwin C Raangs; Miguel P Machado; Catarina I Mendes; Tiago F Jesus; Monika Chlebowicz; Sigrid Rosema; Mario Ramirez; Joao A Carrico; Ingo B Autenrieth; Alex W Friedrich; Silke Peter; John W Rossen;
PUBLISHED: 2018, SOURCE: SCIENTIFIC REPORTS, VOLUME: 8, ISSUE: 1
INDEXED IN: Scopus WOS
Scopus WOS36
TITLE: Clonal and serotype dynamics of serogroup 6 isolates causing invasive pneumococcal disease in Portugal: 1999-2012 Full Text
AUTHORS: Jorge Diamantino Miranda; Sandra Isabel Aguiar; Joao Andre Carrico; Jose Melo Cristino; Mario Ramirez;
PUBLISHED: 2017, SOURCE: PLOS ONE, VOLUME: 12, ISSUE: 2
AUTHORS: Jorge Diamantino Miranda; Sandra Isabel Aguiar; Joao Andre Carrico; Jose Melo Cristino; Mario Ramirez;
PUBLISHED: 2017, SOURCE: PLOS ONE, VOLUME: 12, ISSUE: 2
INDEXED IN: Scopus WOS
Scopus WOS37
TITLE: PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
AUTHORS: Marta Nascimento; Adriano Sousa; Mário Ramirez; Alexandre P Francisco ; João A Carriço; Cátia Vaz;
PUBLISHED: 2017, SOURCE: Bioinform., VOLUME: 33, ISSUE: 1
AUTHORS: Marta Nascimento; Adriano Sousa; Mário Ramirez; Alexandre P Francisco ; João A Carriço; Cátia Vaz;
PUBLISHED: 2017, SOURCE: Bioinform., VOLUME: 33, ISSUE: 1
38
TITLE: Characterization of 18th century Portuguese glass from Real Fabrica de Vidros de Coina
AUTHORS: Filipa Lopes; Augusta Lima; Antonio Pires de Matos; Jorge Custodio; Simone Cagno; Olivier Schalm; Koen Janssens;
PUBLISHED: 2017, SOURCE: JOURNAL OF ARCHAEOLOGICAL SCIENCE-REPORTS, VOLUME: 14
AUTHORS: Filipa Lopes; Augusta Lima; Antonio Pires de Matos; Jorge Custodio; Simone Cagno; Olivier Schalm; Koen Janssens;
PUBLISHED: 2017, SOURCE: JOURNAL OF ARCHAEOLOGICAL SCIENCE-REPORTS, VOLUME: 14
INDEXED IN: Scopus WOS
Scopus WOS39
TITLE: A widespread family of polymorphic toxins encoded by temperate phages Full Text
AUTHORS: Anne Jamet; Marie Touchon; Bruno Ribeiro Goncalves; Joao Andre Carrico; Alain Charbit; Xavier Nassif; Mario Ramirez; Eduardo P C Rocha;
PUBLISHED: 2017, SOURCE: BMC BIOLOGY, VOLUME: 15, ISSUE: 1
AUTHORS: Anne Jamet; Marie Touchon; Bruno Ribeiro Goncalves; Joao Andre Carrico; Alain Charbit; Xavier Nassif; Mario Ramirez; Eduardo P C Rocha;
PUBLISHED: 2017, SOURCE: BMC BIOLOGY, VOLUME: 15, ISSUE: 1
INDEXED IN: Scopus WOS
Scopus WOS40
TITLE: Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks
AUTHORS: Andreia Sofia Teixeira ; Pedro T Monteiro; João A Carriço; Francisco C Santos ; Alexandre P Francisco ;
PUBLISHED: 2017, SOURCE: 17th International Conference on Algorithms and Architectures for Parallel Processing, ICA3PP 2017 in Algorithms and Architectures for Parallel Processing - 17th International Conference, ICA3PP 2017, Helsinki, Finland, August 21-23, 2017, Proceedings, VOLUME: 10393
AUTHORS: Andreia Sofia Teixeira ; Pedro T Monteiro; João A Carriço; Francisco C Santos ; Alexandre P Francisco ;
PUBLISHED: 2017, SOURCE: 17th International Conference on Algorithms and Architectures for Parallel Processing, ICA3PP 2017 in Algorithms and Architectures for Parallel Processing - 17th International Conference, ICA3PP 2017, Helsinki, Finland, August 21-23, 2017, Proceedings, VOLUME: 10393
