André Maria Sande Ribeiro de Serpa Oliva
AuthID: R-002-RP4
11
TITLE: Temperature-dependence of the single-cell variability in the kinetics of transcription activation in Escherichia coli Full Text
AUTHORS: Nadia S M Goncalves; Sofia Startceva; Cristina S D Palma; Mohamed N M Bahrudeen; Samuel M D Oliveira; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: PHYSICAL BIOLOGY, VOLUME: 15, ISSUE: 2
AUTHORS: Nadia S M Goncalves; Sofia Startceva; Cristina S D Palma; Mohamed N M Bahrudeen; Samuel M D Oliveira; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: PHYSICAL BIOLOGY, VOLUME: 15, ISSUE: 2
INDEXED IN: 
Scopus 
WOS
Scopus WOS12
TITLE: The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures
AUTHORS: Ramakanth Neeli Venkata; Samuel M D Oliveira; Leonardo Martins; Sofia Startceva; Mohamed Bahrudeen; Jose M Fonseca; Marco Minoia; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: PHYSICAL BIOLOGY, VOLUME: 15, ISSUE: 5
AUTHORS: Ramakanth Neeli Venkata; Samuel M D Oliveira; Leonardo Martins; Sofia Startceva; Mohamed Bahrudeen; Jose M Fonseca; Marco Minoia; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: PHYSICAL BIOLOGY, VOLUME: 15, ISSUE: 5
INDEXED IN: Scopus WOS
Scopus WOS13
TITLE: A strategy for dissecting the kinetics of transcription repression mechanisms
AUTHORS: Cristina S D Palma; Sofia Startceva; Ramakanth Neeli Venkata; Marzieh Zare; Nadia S M Goncalves; Jose M Fonseca; Samuel M D Oliveira; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: Joint Conference of the European Medical and Biological Engineering Conference (EMBEC) / Nordic-Baltic Conference on Biomedical Engineering and Medical Physics (NBC) in EMBEC & NBC 2017, VOLUME: 65
AUTHORS: Cristina S D Palma; Sofia Startceva; Ramakanth Neeli Venkata; Marzieh Zare; Nadia S M Goncalves; Jose M Fonseca; Samuel M D Oliveira; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: Joint Conference of the European Medical and Biological Engineering Conference (EMBEC) / Nordic-Baltic Conference on Biomedical Engineering and Medical Physics (NBC) in EMBEC & NBC 2017, VOLUME: 65
INDEXED IN: WOS
WOS14
TITLE: Added value of autoregulation and multi-step kinetics of transcription initiation
AUTHORS: Mahendra Kumar Prajapat; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: ROYAL SOCIETY OPEN SCIENCE, VOLUME: 5, ISSUE: 11
AUTHORS: Mahendra Kumar Prajapat; Andre S Ribeiro;
PUBLISHED: 2018, SOURCE: ROYAL SOCIETY OPEN SCIENCE, VOLUME: 5, ISSUE: 11
INDEXED IN: WOS
WOS15
TITLE: SCIP: a single-cell image processor toolbox Full Text
AUTHORS: Leonardo Martins; Ramakanth Neeli Venkata; Samuel M D Oliveira; Antti Hakkinen; Andre S Ribeiro; Jose M Fonseca;
PUBLISHED: 2018, SOURCE: BIOINFORMATICS, VOLUME: 34, ISSUE: 24
AUTHORS: Leonardo Martins; Ramakanth Neeli Venkata; Samuel M D Oliveira; Antti Hakkinen; Andre S Ribeiro; Jose M Fonseca;
PUBLISHED: 2018, SOURCE: BIOINFORMATICS, VOLUME: 34, ISSUE: 24
INDEXED IN: Scopus WOS
Scopus WOS16
TITLE: Rate-limiting steps in transcription dictate sensitivity to variability in cellular components Full Text
AUTHORS: Jarno Makela; Vinodh Kandavalli; Andre S Ribeiro;
PUBLISHED: 2017, SOURCE: SCIENTIFIC REPORTS, VOLUME: 7
AUTHORS: Jarno Makela; Vinodh Kandavalli; Andre S Ribeiro;
PUBLISHED: 2017, SOURCE: SCIENTIFIC REPORTS, VOLUME: 7
INDEXED IN: WOS
WOS17
TITLE: Automatic Classification of Z-ring Formation Stages at the Single Cell Level in Escherichia Coli by Machine Learning
AUTHORS: Marzieh Zare; Ramakanth Neeli Venkata; Leonardo Martins; Sari Peltonen; Ulla Ruotsalainen; Andre S Ribeiro;
PUBLISHED: 2017, SOURCE: 10th International Joint Conference on Biomedical Engineering Systems and Technologies in PROCEEDINGS OF THE 10TH INTERNATIONAL JOINT CONFERENCE ON BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES, VOL 2: BIOIMAGING
AUTHORS: Marzieh Zare; Ramakanth Neeli Venkata; Leonardo Martins; Sari Peltonen; Ulla Ruotsalainen; Andre S Ribeiro;
PUBLISHED: 2017, SOURCE: 10th International Joint Conference on Biomedical Engineering Systems and Technologies in PROCEEDINGS OF THE 10TH INTERNATIONAL JOINT CONFERENCE ON BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES, VOL 2: BIOIMAGING
INDEXED IN: WOS
WOS18
TITLE: Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli. Cytoplasm viscosity hampers aggregate segregation Full Text
AUTHORS: Samuel M D Oliveira; Ramakanth Neeli Venkata; Nadia S M Goncalves; Joao A Santinha; Leonardo Martins; Tran, H; Jarno Makela; Abhishekh Gupta; Marilia Barandas; Antti Hakkinen; Jason Lloyd Price; Jose M Fonseca; Andre S Ribeiro;
PUBLISHED: 2016, SOURCE: MOLECULAR MICROBIOLOGY, VOLUME: 99, ISSUE: 4
AUTHORS: Samuel M D Oliveira; Ramakanth Neeli Venkata; Nadia S M Goncalves; Joao A Santinha; Leonardo Martins; Tran, H; Jarno Makela; Abhishekh Gupta; Marilia Barandas; Antti Hakkinen; Jason Lloyd Price; Jose M Fonseca; Andre S Ribeiro;
PUBLISHED: 2016, SOURCE: MOLECULAR MICROBIOLOGY, VOLUME: 99, ISSUE: 4
19
TITLE: Robustness of the Process of Nucleoid Exclusion of Protein Aggregates in Escherichia coli
AUTHORS: Ramakanth Neeli Venkata; Antti Martikainen; Abhishekh Gupta; Nadia Goncalves; Jose Fonseca; Andre S Ribeiro;
PUBLISHED: 2016, SOURCE: JOURNAL OF BACTERIOLOGY, VOLUME: 198, ISSUE: 6
AUTHORS: Ramakanth Neeli Venkata; Antti Martikainen; Abhishekh Gupta; Nadia Goncalves; Jose Fonseca; Andre S Ribeiro;
PUBLISHED: 2016, SOURCE: JOURNAL OF BACTERIOLOGY, VOLUME: 198, ISSUE: 6
INDEXED IN: Scopus WOS
Scopus WOS20
TITLE: 'miSimBa' - A Simulator of Synthetic Time-Lapsed Microscopy Images of Bacterial Cells
AUTHORS: Leonardo Martins; Jose Fonseca; Andre Ribeiro;
PUBLISHED: 2015, SOURCE: IEEE 4th Portuguese meeting on bioengineering (enbeg) in 2015 IEEE 4TH PORTUGUESE MEETING ON BIOENGINEERING (ENBENG)
AUTHORS: Leonardo Martins; Jose Fonseca; Andre Ribeiro;
PUBLISHED: 2015, SOURCE: IEEE 4th Portuguese meeting on bioengineering (enbeg) in 2015 IEEE 4TH PORTUGUESE MEETING ON BIOENGINEERING (ENBENG)
INDEXED IN: WOS
WOS