Biomolecular Simulation (BioSIM)
Center for Health Technology and Services Research (CINTESIS) :: Clinical and Translational Research
AuthID: I-000-B6D
Publications Actions
Publications at Authenticus Institutional Profile
An Authenticus institution (group) is an organization which consists of a set of researchers (institutional/group team). The set of researchers depends on the organizational structure of the institution per year and can be set at the institution profile, under ‘Researchers’ interface. Based on the institutional team we produce listings of publications, statistics and institutional reports.
Publications displayed at an Authenticus institutional profile depend on two parameters:
- Researchers team associated with the institution per year.
- Publications source type.
We define 3 types of publication sources:
- Validated by team members - includes all publications validated by team members. Requires the definition of the institutional team.
- All published by team members - includes all publications validated by the institution team members plus all not-validated (only identified) publications. Requires the definition of the institutional team.
- Affiliation Based - includes publications that have the institution/group in the publication affiliation. Does not require institutional team, but at the same time does not guarantee that all publications will be listed.
External
Internal
No data about last update.
Rules:
This actions updates publications citations of every team member.
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
No data about last update.
Rules:
This actions updates all pre print publications of the group/institution.
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Publications Count: 436
8 Team MembersFilters -> Year: 2026
181
TITLE: Epigenetic therapy in urologic cancers: An update on clinical trials
AUTHORS: Faleiro, I; Leão, R; Binnie, A; de Mello, RA; Maia, AT ; Castelo Branco, P;
PUBLISHED: 2017, SOURCE: Oncotarget, VOLUME: 8, ISSUE: 7, PAGES: 12484-12500
AUTHORS: Faleiro, I; Leão, R; Binnie, A; de Mello, RA; Maia, AT ; Castelo Branco, P;
PUBLISHED: 2017, SOURCE: Oncotarget, VOLUME: 8, ISSUE: 7, PAGES: 12484-12500
182
TITLE: EWSR1 rearrangement is a frequent event in papillary thyroid carcinoma and in carcinoma of the thyroid with Ewing family tumor elements (CEFTE) Full Text
AUTHORS: Oliveira, G ; Polonia, A; M. Cameselle Teijeiro; Leitao, D; Sapia, S; Sobrinho Simoes, M; Eloy, C;
PUBLISHED: 2017, SOURCE: VIRCHOWS ARCHIV, VOLUME: 470, ISSUE: 5, PAGES: 517-525
AUTHORS: Oliveira, G ; Polonia, A; M. Cameselle Teijeiro; Leitao, D; Sapia, S; Sobrinho Simoes, M; Eloy, C;
PUBLISHED: 2017, SOURCE: VIRCHOWS ARCHIV, VOLUME: 470, ISSUE: 5, PAGES: 517-525
183
TITLE: Identification of miRSNPs associated with the risk of multiple myeloma. Identification of miRSNPs associated with the risk of multiple myeloma Full Text
AUTHORS: Angelica Macauda; Diego Calvetti; Giuseppe Maccari; Kari Hemminki; Asta Foersti; Hartmut Goldschmidt; Niels Weinhold; Richard Houlston; Vibeke Andersen; Ulla Vogel; Gabriele Buda; Judit Varkonyi; Anna Sureda; Joaquin Martinez Lopez; Marzena Watek; Aleksandra Butrym; Maria E Eugenia Sarasquete; Marek Dudzinski; Artur Jurczyszyn; Agnieszka Druzd Sitek; ...More
PUBLISHED: 2017, SOURCE: INTERNATIONAL JOURNAL OF CANCER, VOLUME: 140, ISSUE: 3, PAGES: 526-534
AUTHORS: Angelica Macauda; Diego Calvetti; Giuseppe Maccari; Kari Hemminki; Asta Foersti; Hartmut Goldschmidt; Niels Weinhold; Richard Houlston; Vibeke Andersen; Ulla Vogel; Gabriele Buda; Judit Varkonyi; Anna Sureda; Joaquin Martinez Lopez; Marzena Watek; Aleksandra Butrym; Maria E Eugenia Sarasquete; Marek Dudzinski; Artur Jurczyszyn; Agnieszka Druzd Sitek; ...More
PUBLISHED: 2017, SOURCE: INTERNATIONAL JOURNAL OF CANCER, VOLUME: 140, ISSUE: 3, PAGES: 526-534
184
TITLE: Improving the Catalytic Power of the DszD Enzyme for the Biodesulfurization of Crude Oil and Derivatives Full Text
AUTHORS: Ferreira, P; Sérgio F. Sousa ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 23, ISSUE: 68, PAGES: 17231-17241
AUTHORS: Ferreira, P; Sérgio F. Sousa ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 23, ISSUE: 68, PAGES: 17231-17241
185
TITLE: The Catalytic Mechanism of the Pyridoxal-5 '-phosphate-Dependent Enzyme, Histidine Decarboxylase: A Computational Study
AUTHORS: Fernandes, HS ; Ramos, MJ ; Cerqueira, NMFSA ;
PUBLISHED: 2017, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 23, ISSUE: 38, PAGES: 9162-9173
AUTHORS: Fernandes, HS ; Ramos, MJ ; Cerqueira, NMFSA ;
PUBLISHED: 2017, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 23, ISSUE: 38, PAGES: 9162-9173
186
TITLE: The mechanism of the Ser-(cis)Ser-Lys catalytic triad of peptide amidases Full Text
AUTHORS: Cerqueira, NMFSA ; Moorthy, H; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 19, ISSUE: 19, PAGES: 12343-12354
AUTHORS: Cerqueira, NMFSA ; Moorthy, H; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 19, ISSUE: 19, PAGES: 12343-12354
187
TITLE: Total Facial Discrimination of 1,3-Dipolar Cycloadditions in a D-Erythrose 1,3-Dioxane Template: Computational Studies of a Concerted Mechanism
AUTHORS: Sousa, CEA; Ribeiro, AMP; Fortes, AG; Cerqueira, NMFSA ; Alves, MJ;
PUBLISHED: 2017, SOURCE: JOURNAL OF ORGANIC CHEMISTRY, VOLUME: 82, ISSUE: 2, PAGES: 982-991
AUTHORS: Sousa, CEA; Ribeiro, AMP; Fortes, AG; Cerqueira, NMFSA ; Alves, MJ;
PUBLISHED: 2017, SOURCE: JOURNAL OF ORGANIC CHEMISTRY, VOLUME: 82, ISSUE: 2, PAGES: 982-991
188
TITLE: A common variant within the HNF1B gene is associated with overall survival of multiple myeloma patients: Results from the IMMEnSE consortium and meta-analysis
AUTHORS: Rafael Rios Tamayo; Carmen B Belen Lupianez; Daniele Campa; Thomas Hielscher; Niels Weinhold; Joaquin Martinez Lopez; Andres Jerez; Stefano Landi; Krzysztof Jamroziak; Charles Dumontet; Marzena Watek; Fabienne Lesueur; Rui Manuel Reis; Herlander Marques ; Artur Jurczyszyn; Ulla Vogel; Gabriele Buda; Ramon Garcia Sanz; Enrico Orciuolo; Mario Petrini; ...More
PUBLISHED: 2016, SOURCE: ONCOTARGET, VOLUME: 7, ISSUE: 37, PAGES: 59029-59048
AUTHORS: Rafael Rios Tamayo; Carmen B Belen Lupianez; Daniele Campa; Thomas Hielscher; Niels Weinhold; Joaquin Martinez Lopez; Andres Jerez; Stefano Landi; Krzysztof Jamroziak; Charles Dumontet; Marzena Watek; Fabienne Lesueur; Rui Manuel Reis; Herlander Marques ; Artur Jurczyszyn; Ulla Vogel; Gabriele Buda; Ramon Garcia Sanz; Enrico Orciuolo; Mario Petrini; ...More
PUBLISHED: 2016, SOURCE: ONCOTARGET, VOLUME: 7, ISSUE: 37, PAGES: 59029-59048
189
TITLE: A Flow Cytometric and Computational Approaches to Carbapenems Affinity to the Different Types of Carbapenemases Full Text
AUTHORS: Cidalia Pina Vaz ; Ana P Silva ; Isabel Faria-Ramos; Rita Teixeira Santos ; Daniel Moura; Tatiana F Vieira; Sérgio F. Sousa ; Sofia Costa de Oliveira ; Rafael Canton; Acacio G Rodrigues ;
PUBLISHED: 2016, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 7, ISSUE: AUG
AUTHORS: Cidalia Pina Vaz ; Ana P Silva ; Isabel Faria-Ramos; Rita Teixeira Santos ; Daniel Moura; Tatiana F Vieira; Sérgio F. Sousa ; Sofia Costa de Oliveira ; Rafael Canton; Acacio G Rodrigues ;
PUBLISHED: 2016, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 7, ISSUE: AUG
190
TITLE: Absence of microsatellite instability and BRAF (V600E) mutation in testicular germ cell tumors Full Text
AUTHORS: Carcano, FM; Lengert, AH; Vidal, DO; Scapulatempo Neto, CS; Queiroz, L; Marques, H ; Baltazar, F ; Berardinelli, GN; Martinelli, CMS; da Silva, ECA; Reis, RM ; Lopes, LF;
PUBLISHED: 2016, SOURCE: ANDROLOGY, VOLUME: 4, ISSUE: 5, PAGES: 866-872
AUTHORS: Carcano, FM; Lengert, AH; Vidal, DO; Scapulatempo Neto, CS; Queiroz, L; Marques, H ; Baltazar, F ; Berardinelli, GN; Martinelli, CMS; da Silva, ECA; Reis, RM ; Lopes, LF;
PUBLISHED: 2016, SOURCE: ANDROLOGY, VOLUME: 4, ISSUE: 5, PAGES: 866-872
191
TITLE: Abstract A31: Integrative differential allelic expression analysis efficiently reveals the biology underlying risk to breast cancer
AUTHORS: Joana Xavier; Roslin Russell; Bernardo P Almeida; Nordiana Rosli; Catia Rocha; Shamith Samarajiwa; Suet-Feung Chin; Carlos Caldas; Bruce AJ Ponder; Ana-Teresa Maia ;
PUBLISHED: 2016, SOURCE: Genomics - Sporadic and Hereditary
AUTHORS: Joana Xavier; Roslin Russell; Bernardo P Almeida; Nordiana Rosli; Catia Rocha; Shamith Samarajiwa; Suet-Feung Chin; Carlos Caldas; Bruce AJ Ponder; Ana-Teresa Maia ;
PUBLISHED: 2016, SOURCE: Genomics - Sporadic and Hereditary
192
TITLE: Binding mode of conformations and structure-based pharmacophore development for farnesyltransferase inhibitors Full Text
AUTHORS: Hari Narayana H N Moorthy; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: MEDICINAL CHEMISTRY RESEARCH, VOLUME: 25, ISSUE: 7, PAGES: 1340-1357
AUTHORS: Hari Narayana H N Moorthy; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: MEDICINAL CHEMISTRY RESEARCH, VOLUME: 25, ISSUE: 7, PAGES: 1340-1357
193
TITLE: Cholesterol Biosynthesis: A Mechanistic Overview Full Text
AUTHORS: Cerqueira, NMFSA ; Oliveira, EF; Gesto, DS; Santos Martins, D; cristina freire ; Moorthy, HN; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: BIOCHEMISTRY, VOLUME: 55, ISSUE: 39, PAGES: 5483-5506
AUTHORS: Cerqueira, NMFSA ; Oliveira, EF; Gesto, DS; Santos Martins, D; cristina freire ; Moorthy, HN; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: BIOCHEMISTRY, VOLUME: 55, ISSUE: 39, PAGES: 5483-5506
194
TITLE: HMG-CoA Reductase inhibitors: an updated review of patents of novel compounds and formulations (2011-2015)
AUTHORS: Oliveira, EF; Santos Martins, D; Ribeiro, AM ; Bras, NF ; Cerqueira, NS ; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: EXPERT OPINION ON THERAPEUTIC PATENTS, VOLUME: 26, ISSUE: 11, PAGES: 1257-1272
AUTHORS: Oliveira, EF; Santos Martins, D; Ribeiro, AM ; Bras, NF ; Cerqueira, NS ; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: EXPERT OPINION ON THERAPEUTIC PATENTS, VOLUME: 26, ISSUE: 11, PAGES: 1257-1272
195
TITLE: Hotspot TERT promoter mutations are rare events in testicular germ cell tumors
AUTHORS: Flavio Mavignier Carcano; Daniel Onofre Vidal; Andre van Helvoort Lengert; Cristovam Scapulatempo Neto; Luisa Queiroz; Herlander Marques ; Fatima Baltazar ; Camila Maria D da Silva Martinelli; Paula Soares ; Eduardo Caetano A Albino da Silva; Luiz Fernando Lopes; Rui Manuel Reis;
PUBLISHED: 2016, SOURCE: TUMOR BIOLOGY, VOLUME: 37, ISSUE: 4, PAGES: 4901-4907
AUTHORS: Flavio Mavignier Carcano; Daniel Onofre Vidal; Andre van Helvoort Lengert; Cristovam Scapulatempo Neto; Luisa Queiroz; Herlander Marques ; Fatima Baltazar ; Camila Maria D da Silva Martinelli; Paula Soares ; Eduardo Caetano A Albino da Silva; Luiz Fernando Lopes; Rui Manuel Reis;
PUBLISHED: 2016, SOURCE: TUMOR BIOLOGY, VOLUME: 37, ISSUE: 4, PAGES: 4901-4907
196
TITLE: Improving the Biodesulfurization of Crude Oil and Derivatives: A QM/MM Investigation of the Catalytic Mechanism of NADH-FMN Oxidoreductase (DszD)
AUTHORS: Sérgio F. Sousa ; Joana F M Sousa; Ana C C Barbosa; Cleide E Ferreira; Neves, Rui P. P. ; Antonio J M Ribeiro ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2016, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY A, VOLUME: 120, ISSUE: 27, PAGES: 5300-5306
AUTHORS: Sérgio F. Sousa ; Joana F M Sousa; Ana C C Barbosa; Cleide E Ferreira; Neves, Rui P. P. ; Antonio J M Ribeiro ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2016, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY A, VOLUME: 120, ISSUE: 27, PAGES: 5300-5306
197
TITLE: Methodology for single nucleotide polymorphism selection in promoter regions for clinical use. An example of its applicability Full Text
AUTHORS: Marques, H ; Freitas, J; Rui Medeiros ; Longatto, A;
PUBLISHED: 2016, SOURCE: INTERNATIONAL JOURNAL OF MOLECULAR EPIDEMIOLOGY AND GENETICS, VOLUME: 7, ISSUE: 3, PAGES: 126-+
AUTHORS: Marques, H ; Freitas, J; Rui Medeiros ; Longatto, A;
PUBLISHED: 2016, SOURCE: INTERNATIONAL JOURNAL OF MOLECULAR EPIDEMIOLOGY AND GENETICS, VOLUME: 7, ISSUE: 3, PAGES: 126-+
INDEXED IN: 
Scopus 
WOS 
Handle
Scopus WOS Handle198
TITLE: Molecular dynamic simulations and structure-based pharmacophore development for farnesyltransferase inhibitors discovery Full Text
AUTHORS: Moorthy, NSHN; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, VOLUME: 31, ISSUE: 6, PAGES: 1428-1442
AUTHORS: Moorthy, NSHN; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, VOLUME: 31, ISSUE: 6, PAGES: 1428-1442
199
TITLE: PIK3CA mutant allele differential expression (MADE) associates with breast cancer clinical features Full Text
AUTHORS: Xavier, J; Almeida, B; Sun, C; Silva, J; Marreiros, A; Eldridge, M; Bernards, R; Carlos, C; S.F Chin; A.T Maia ;
PUBLISHED: 2016, SOURCE: European Journal of Cancer, VOLUME: 61
AUTHORS: Xavier, J; Almeida, B; Sun, C; Silva, J; Marreiros, A; Eldridge, M; Bernards, R; Carlos, C; S.F Chin; A.T Maia ;
PUBLISHED: 2016, SOURCE: European Journal of Cancer, VOLUME: 61
INDEXED IN: 
CrossRef
CrossRef200
TITLE: QM/MM study of the mechanism of reduction of 3-hydroxy-3-methylglutaryl coenzyme A catalyzed by human HMG-CoA reductase
AUTHORS: Eduardo F Oliveira; Nuno M F S A Cerqueira ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: CATALYSIS SCIENCE & TECHNOLOGY, VOLUME: 6, ISSUE: 19, PAGES: 7172-7185
AUTHORS: Eduardo F Oliveira; Nuno M F S A Cerqueira ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: CATALYSIS SCIENCE & TECHNOLOGY, VOLUME: 6, ISSUE: 19, PAGES: 7172-7185
