António José Meireles Ribeiro


AuthID: R-000-W64

Confirmed Publications: 38



1
TITLE: Enzyme function and evolution through the lens of bioinformatics
AUTHORS: Antonio J M Ribeiro ; Ioannis G Riziotis; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2023, SOURCE: Biochemical Journal, VOLUME: 480, ISSUE: 22
INDEXED IN: CrossRef
IN MY: ORCID
2
TITLE: EzMechanism: an automated tool to propose catalytic mechanisms of enzyme reactions
AUTHORS: Antonio J M Ribeiro ; Ioannis G Riziotis; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2023, SOURCE: Nature Methods, VOLUME: 20, ISSUE: 10
INDEXED IN: CrossRef: 1
IN MY: ORCID
3
TITLE: The 3D modules of enzyme catalysis: deconstructing active sites into distinct functional entities
AUTHORS: Ioannis G Riziotis; António J M Ribeiro ; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2023
INDEXED IN: CrossRef
IN MY: ORCID
4
TITLE: EzMechanism: An Automated Tool to Propose Catalytic Mechanisms of Enzyme Reactions
AUTHORS: Antonio J M Ribeiro ; Ioannis G Riziotis; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2022
INDEXED IN: CrossRef: 2
IN MY: ORCID
5
TITLE: GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs  Full Text
AUTHORS: Charles A Santana; Sandro C Izidoro; Raquel C de Melo-Minardi; Jonathan D Tyzack; António J M Ribeiro ; Douglas E V Pires; Janet M Thornton; Sabrina de A. Silveira;
PUBLISHED: 2022, SOURCE: Nucleic Acids Research, VOLUME: 50, ISSUE: W1
INDEXED IN: CrossRef: 6
IN MY: ORCID
6
TITLE: Using mechanism similarity to understand enzyme evolution  Full Text
AUTHORS: António J M Ribeiro ; Ioannis G Riziotis; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2022, SOURCE: Biophysical Reviews, VOLUME: 14, ISSUE: 6
INDEXED IN: CrossRef: 6
IN MY: ORCID
7
TITLE: Conformational variation in enzyme catalysis: A structural study on catalytic residues
AUTHORS: Ioannis G Riziotis; António J M Ribeiro ; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2021
INDEXED IN: CrossRef
IN MY: ORCID
8
TITLE: The Enzyme Portal: an integrative tool for enzyme information and analysis  Full Text
AUTHORS: Rossana Zaru; Joseph Onwubiko; Antonio J M Ribeiro ; Keeva Cochrane; Jonathan D Tyzack; Venkatesh Muthukrishnan; Lukas Pravda; Janet M Thornton; Claire O’Donovan; Sameer Velanker; Sandra Orchard; Andrew Leach; Maria J Martin;
PUBLISHED: 2021, SOURCE: The FEBS Journal, VOLUME: 289, ISSUE: 19
INDEXED IN: CrossRef: 2
IN MY: ORCID
9
TITLE: A global analysis of function and conservation of catalytic residues in enzymes
AUTHORS: António J.M Ribeiro ; Jonathan D Tyzack; Neera Borkakoti; Gemma L Holliday; Janet M Thornton;
PUBLISHED: 2020, SOURCE: Journal of Biological Chemistry, VOLUME: 295, ISSUE: 2
INDEXED IN: CrossRef: 63
IN MY: ORCID
10
TITLE: GRaSP: a graph-based residue neighborhood strategy to predict binding sites  Full Text
AUTHORS: Charles A Santana; Sabrina de A Silveira; João P A Moraes; Sandro C Izidoro; Raquel C de Melo-Minardi; António J M Ribeiro ; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2020, SOURCE: Bioinformatics, VOLUME: 36, ISSUE: Supplement_2
INDEXED IN: CrossRef: 8
IN MY: ORCID
Page 1 of 4. Total results: 38.

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