Biomolecular Simulation (BioSIM)
Center for Health Technology and Services Research (CINTESIS) :: Clinical and Translational Research
AuthID: I-000-B6D
Publications Actions
Publications at Authenticus Institutional Profile
An Authenticus institution (group) is an organization which consists of a set of researchers (institutional/group team). The set of researchers depends on the organizational structure of the institution per year and can be set at the institution profile, under ‘Researchers’ interface. Based on the institutional team we produce listings of publications, statistics and institutional reports.
Publications displayed at an Authenticus institutional profile depend on two parameters:
- Researchers team associated with the institution per year.
- Publications source type.
We define 3 types of publication sources:
- Validated by team members - includes all publications validated by team members. Requires the definition of the institutional team.
- All published by team members - includes all publications validated by the institution team members plus all not-validated (only identified) publications. Requires the definition of the institutional team.
- Affiliation Based - includes publications that have the institution/group in the publication affiliation. Does not require institutional team, but at the same time does not guarantee that all publications will be listed.
External
Internal
No data about last update.
Rules:
This actions updates publications citations of every team member.
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
No data about last update.
Rules:
This actions updates all pre print publications of the group/institution.
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Publications Count: 432
8 Team MembersFilters -> Year: 2026
321
TITLE: Molecular dynamics simulations on the critical states of the farnesyltransferase enzyme Full Text
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2009, SOURCE: BIOORGANIC & MEDICINAL CHEMISTRY, VOLUME: 17, ISSUE: 9, PAGES: 3369-3378
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2009, SOURCE: BIOORGANIC & MEDICINAL CHEMISTRY, VOLUME: 17, ISSUE: 9, PAGES: 3369-3378
322
TITLE: Mycobacterium gordonae urinary infection in a renal transplant recipient Full Text
AUTHORS: Pinho, L; Santos, J; Oliveira, G ; Pestana, M ;
PUBLISHED: 2009, SOURCE: TRANSPLANT INFECTIOUS DISEASE, VOLUME: 11, ISSUE: 3, PAGES: 253-256
AUTHORS: Pinho, L; Santos, J; Oliveira, G ; Pestana, M ;
PUBLISHED: 2009, SOURCE: TRANSPLANT INFECTIOUS DISEASE, VOLUME: 11, ISSUE: 3, PAGES: 253-256
323
TITLE: Recent advances on computational proteomics
AUTHORS: Sérgio F. Sousa ; Cerqueira, NMFSA ; Perez, MAS; Moreira, IS ; Ribeiro, AJM ; Neves, ARAP; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2009, SOURCE: World Academy of Science, Engineering and Technology, VOLUME: 56, PAGES: 376-386
AUTHORS: Sérgio F. Sousa ; Cerqueira, NMFSA ; Perez, MAS; Moreira, IS ; Ribeiro, AJM ; Neves, ARAP; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2009, SOURCE: World Academy of Science, Engineering and Technology, VOLUME: 56, PAGES: 376-386
INDEXED IN: 
Scopus
Scopus324
TITLE: RECOMMENDATIONS FOR DIAGNOSIS, TREATMENT AND MONITORING OF CHRONIC MYELOID LEUKEMIA Full Text
AUTHORS: Antonio Almeida ; Isabel Castro; Jorge Coutinho; Lurdes Guerra; Herlander Marques ; Ana Marques Pereira;
PUBLISHED: 2009, SOURCE: ACTA MEDICA PORTUGUESA, VOLUME: 22, ISSUE: 5, PAGES: 537-544
AUTHORS: Antonio Almeida ; Isabel Castro; Jorge Coutinho; Lurdes Guerra; Herlander Marques ; Ana Marques Pereira;
PUBLISHED: 2009, SOURCE: ACTA MEDICA PORTUGUESA, VOLUME: 22, ISSUE: 5, PAGES: 537-544
INDEXED IN: Scopus 
WOS
Scopus WOS325
TITLE: Sweet syndrome as the presenting symptom of hairy cell leukemia
AUTHORS: Ventura, F; Rocha, J; Pereira, T; Marques, H ; Pardal, F; Brito, C;
PUBLISHED: 2009, SOURCE: Dermatology Online Journal, VOLUME: 15, ISSUE: 2
AUTHORS: Ventura, F; Rocha, J; Pereira, T; Marques, H ; Pardal, F; Brito, C;
PUBLISHED: 2009, SOURCE: Dermatology Online Journal, VOLUME: 15, ISSUE: 2
INDEXED IN: Scopus
Scopus326
TITLE: The Effect of the Sixth Sulfur Ligand in the Catalytic Mechanism of Periplasmic Nitrate Reductase Full Text
AUTHORS: Cerqueira, NMFSA ; Gonzalez, PJ; Brondino, CD; Romao, MJ ; Romao, CC ; Moura, I ; Moura, JJG ;
PUBLISHED: 2009, SOURCE: JOURNAL OF COMPUTATIONAL CHEMISTRY, VOLUME: 30, ISSUE: 15, PAGES: 2466-2484
AUTHORS: Cerqueira, NMFSA ; Gonzalez, PJ; Brondino, CD; Romao, MJ ; Romao, CC ; Moura, I ; Moura, JJG ;
PUBLISHED: 2009, SOURCE: JOURNAL OF COMPUTATIONAL CHEMISTRY, VOLUME: 30, ISSUE: 15, PAGES: 2466-2484
327
TITLE: The Search for the Mechanism of the Reaction Catalyzed by Farnesyltransferase Full Text
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2009, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 15, ISSUE: 17, PAGES: 4243-4247
AUTHORS: Sérgio F. Sousa ; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2009, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 15, ISSUE: 17, PAGES: 4243-4247
328
TITLE: The Zinc proteome: a tale of stability and functionality Full Text
AUTHORS: Sérgio F. Sousa ; Ana Branca Lopes; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2009, SOURCE: DALTON TRANSACTIONS, ISSUE: 38, PAGES: 7946-7956
AUTHORS: Sérgio F. Sousa ; Ana Branca Lopes; Pedro Alexandrino Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2009, SOURCE: DALTON TRANSACTIONS, ISSUE: 38, PAGES: 7946-7956
329
TITLE: Virtual screening of compound libraries.
AUTHORS: Cerqueira, NM ; Sérgio F. Sousa ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2009, SOURCE: Methods in molecular biology (Clifton, N.J.), VOLUME: 572, PAGES: 57-70
AUTHORS: Cerqueira, NM ; Sérgio F. Sousa ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2009, SOURCE: Methods in molecular biology (Clifton, N.J.), VOLUME: 572, PAGES: 57-70
330
TITLE: Allele-specific up-regulation of FGFR2 increases susceptibility to breast cancer Full Text
AUTHORS: Kerstin B Meyer; Ana Teresa Maia ; Martin O'Reilly; Andrew E Teschendorff; Suet Feung Chin; Carlos Caldas; Bruce A J Ponder;
PUBLISHED: 2008, SOURCE: PLOS BIOLOGY, VOLUME: 6, ISSUE: 5, PAGES: 1098-1103
AUTHORS: Kerstin B Meyer; Ana Teresa Maia ; Martin O'Reilly; Andrew E Teschendorff; Suet Feung Chin; Carlos Caldas; Bruce A J Ponder;
PUBLISHED: 2008, SOURCE: PLOS BIOLOGY, VOLUME: 6, ISSUE: 5, PAGES: 1098-1103
331
TITLE: Carbohydrate-binding modules from family 11: Understanding the binding mode of polysaccharides Full Text
AUTHORS: Bras, NF ; Cerqueira, NMFSA ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2008, SOURCE: 3rd International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 108, ISSUE: 11, PAGES: 2030-2040
AUTHORS: Bras, NF ; Cerqueira, NMFSA ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2008, SOURCE: 3rd International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 108, ISSUE: 11, PAGES: 2030-2040
332
TITLE: Enzyme flexibility and the catalytic mechanism of farnesyltransferase: Targeting the relation
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 112, ISSUE: 29, PAGES: 8681-8691
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY B, VOLUME: 112, ISSUE: 29, PAGES: 8681-8691
333
TITLE: Farnesyltransferase inhibitors: A detailed chemical view on an elusive biological problem
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: CURRENT MEDICINAL CHEMISTRY, VOLUME: 15, ISSUE: 15, PAGES: 1478-1492
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: CURRENT MEDICINAL CHEMISTRY, VOLUME: 15, ISSUE: 15, PAGES: 1478-1492
334
TITLE: Fc gamma RIIa polymorphism and clinical response to rituximab in non-Hodgkin lymphoma patients Full Text
AUTHORS: Marcia Paiva; Herlander Marques ; Angelo Martins; Paula Ferreira; Raquel Catarino ; Rui Medeiros ;
PUBLISHED: 2008, SOURCE: CANCER GENETICS AND CYTOGENETICS, VOLUME: 183, ISSUE: 1, PAGES: 35-40
AUTHORS: Marcia Paiva; Herlander Marques ; Angelo Martins; Paula Ferreira; Raquel Catarino ; Rui Medeiros ;
PUBLISHED: 2008, SOURCE: CANCER GENETICS AND CYTOGENETICS, VOLUME: 183, ISSUE: 1, PAGES: 35-40
335
TITLE: Mechanisms and sequelae of E-cadherin silencing in hereditary diffuse gastric cancer Full Text
AUTHORS: Barber, M; Murrell, A; Ito, Y; Maia, AT ; Hyland, S; Oliveira, C; Save, V; Carneiro, F ; Paterson, AL; Grehan, N; Dwerryhouse, S; Lao Sirieix, P; Caldas, C; Fitzgerald, RC;
PUBLISHED: 2008, SOURCE: JOURNAL OF PATHOLOGY, VOLUME: 216, ISSUE: 3, PAGES: 295-306
AUTHORS: Barber, M; Murrell, A; Ito, Y; Maia, AT ; Hyland, S; Oliveira, C; Save, V; Carneiro, F ; Paterson, AL; Grehan, N; Dwerryhouse, S; Lao Sirieix, P; Caldas, C; Fitzgerald, RC;
PUBLISHED: 2008, SOURCE: JOURNAL OF PATHOLOGY, VOLUME: 216, ISSUE: 3, PAGES: 295-306
336
TITLE: Modulation of alpha-interferon synthesis by aspiration biopsy cultures by anti-IL-2 alpha chain receptor antibody therapy Full Text
AUTHORS: Oliveira, G ; Xavier, P; Norton, S; Araujo, C; Gaiao, S; Alves, H; Pestana, M;
PUBLISHED: 2008, SOURCE: 22nd European Immunogenetics and Histocompatibility Conference in TISSUE ANTIGENS, VOLUME: 71, ISSUE: 4, PAGES: 312-312
AUTHORS: Oliveira, G ; Xavier, P; Norton, S; Araujo, C; Gaiao, S; Alves, H; Pestana, M;
PUBLISHED: 2008, SOURCE: 22nd European Immunogenetics and Histocompatibility Conference in TISSUE ANTIGENS, VOLUME: 71, ISSUE: 4, PAGES: 312-312
INDEXED IN: WOS
WOS337
TITLE: Molecular determinants of ligand specificity in family 11 carbohydrate binding modules - an NMR, X-ray crystallography and computational chemistry approach. Determinants of ligand specificity in CtCBM11 Full Text
AUTHORS: Aldino Viegas; Natercia F Bras ; Nuno M F S A Cerqueira ; Pedro Alexandrino Fernandes ; Jose A M Prates ; Carlos M G A Fontes ; Marta Bruix; Maria Joao Romao ; Ana Luisa Carvalho ; Maria Joao Ramos ; Anjos L Macedo; Eurico J Cabrita ;
PUBLISHED: 2008, SOURCE: FEBS JOURNAL, VOLUME: 275, ISSUE: 10, PAGES: 2524-2535
AUTHORS: Aldino Viegas; Natercia F Bras ; Nuno M F S A Cerqueira ; Pedro Alexandrino Fernandes ; Jose A M Prates ; Carlos M G A Fontes ; Marta Bruix; Maria Joao Romao ; Ana Luisa Carvalho ; Maria Joao Ramos ; Anjos L Macedo; Eurico J Cabrita ;
PUBLISHED: 2008, SOURCE: FEBS JOURNAL, VOLUME: 275, ISSUE: 10, PAGES: 2524-2535
338
TITLE: Molecular dynamics analysis of farnesyltransferase: A closer look into the amino acid behavior Full Text
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: 3rd International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 108, ISSUE: 11, PAGES: 1939-1950
AUTHORS: Sérgio F. Sousa ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2008, SOURCE: 3rd International Theoretical Biophysics Symposium in INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 108, ISSUE: 11, PAGES: 1939-1950
339
TITLE: Periplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenum
AUTHORS: Najmudin, S ; Gonzalez, PJ; Trincao, J; Coelho, C; Mukhopadhyay, A; Cerqueira, NMFSA ; Romao, CC ; Moura, I ; Moura, JJG ; Brondino, CD; Romao, MJ ;
PUBLISHED: 2008, SOURCE: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, VOLUME: 13, ISSUE: 5, PAGES: 737-753
AUTHORS: Najmudin, S ; Gonzalez, PJ; Trincao, J; Coelho, C; Mukhopadhyay, A; Cerqueira, NMFSA ; Romao, CC ; Moura, I ; Moura, JJG ; Brondino, CD; Romao, MJ ;
PUBLISHED: 2008, SOURCE: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, VOLUME: 13, ISSUE: 5, PAGES: 737-753
340
TITLE: Somatically acquired hypomethylation of IGF2 in breast and colorectal cancer
AUTHORS: Yoko Ito; Thibaud Koessler; Ashraf E K Ibrahim; Sushma Rai; Sarah L Vowler; Sayeda Abu Amero; Ana Luisa Silva; Ana Teresa Maia ; Joanna E Huddleston; Santiago Uribe Lewis; Kathryn Woodfine; Maja Jagodic; Raffaella Nativio; Alison Dunning; Gudrun Moore; Elena Klenova; Sheila Bingham; Paul D P Pharoah; James D Brenton; Stephan Beck; ...More
PUBLISHED: 2008, SOURCE: HUMAN MOLECULAR GENETICS, VOLUME: 17, ISSUE: 17, PAGES: 2633-2643
AUTHORS: Yoko Ito; Thibaud Koessler; Ashraf E K Ibrahim; Sushma Rai; Sarah L Vowler; Sayeda Abu Amero; Ana Luisa Silva; Ana Teresa Maia ; Joanna E Huddleston; Santiago Uribe Lewis; Kathryn Woodfine; Maja Jagodic; Raffaella Nativio; Alison Dunning; Gudrun Moore; Elena Klenova; Sheila Bingham; Paul D P Pharoah; James D Brenton; Stephan Beck; ...More
PUBLISHED: 2008, SOURCE: HUMAN MOLECULAR GENETICS, VOLUME: 17, ISSUE: 17, PAGES: 2633-2643
