21
TITLE: Predicting the number of biochemical transformations needed to synthesize a compound
AUTHORS: Correia, Joao; Carreira, Rafael; Pereira, Vitor ; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) / IEEE World Congress on Computational Intelligence (IEEE WCCI) / International Joint Conference on Neural Networks (IJCNN) / IEEE Congress on Evolutionary Computation (IEEE CEC) in 2022 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN), VOLUME: 2022-July
INDEXED IN: Scopus WOS CrossRef
22
TITLE: Preface
AUTHORS: Rocha, M ; Fdez Riverola, F; Mohamad, MS; Casado Vara, R;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2021 in Lecture Notes in Networks and Systems, VOLUME: 325 LNNS
INDEXED IN: Scopus
23
TITLE: ProPythia: A Python package for protein classification based on machine and deep learning  Full Text
AUTHORS: Sequeira, Ana Marta; Lousa, Diana; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: NEUROCOMPUTING, VOLUME: 484
INDEXED IN: Scopus WOS CrossRef: 13
24
TITLE: Reconstruction of tissue-specific genome-scale metabolic models for human cancer stem cells
AUTHORS: Barata, T; Vieira, V; Rodrigues, R; das Neves, RP; Rocha, M ;
PUBLISHED: 2022, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 142
INDEXED IN: Scopus WOS CrossRef: 6
25
TITLE: Recurrent Deep Neural Networks for Enzyme Functional Annotation
AUTHORS: Sequeira, Ana Marta; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS CrossRef: 3
26
TITLE: UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets
AUTHORS: Sequeira, Joao C.; Rocha, Miguel ; Alves, M. Madalena; Salvador, Andreia F.;
PUBLISHED: 2022, SOURCE: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, VOLUME: 20
INDEXED IN: Scopus WOS
27
TITLE: Variational Autoencoders and Evolutionary Algorithms for Targeted Novel Enzyme Design
AUTHORS: Martins, Miguel; Rocha, Miguel ; Pereira, Vitor ;
PUBLISHED: 2022, SOURCE: IEEE Congress on Evolutionary Computation (CEC) in 2022 IEEE CONGRESS ON EVOLUTIONARY COMPUTATION (CEC)
INDEXED IN: Scopus WOS CrossRef
29
TITLE: Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses
AUTHORS: Dugourd, A; Kuppe, C; Sciacovelli, M; Gjerga, E; Gabor, A; Emdal, KB; Vieira, V; Bekker Jensen, DB; Kranz, J; Bindels, EMJ; Costa, ASH; Sousa, A; Beltrao, P; Rocha, M ; Olsen, JV; Frezza, C; Kramann, R; Saez Rodriguez, J;
PUBLISHED: 2021, SOURCE: MOLECULAR SYSTEMS BIOLOGY, VOLUME: 17, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 92
30
TITLE: Combining Multi-objective Evolutionary Algorithms with Deep Generative Models Towards Focused Molecular Design
AUTHORS: Sousa, T; Correia, J; Pereira, V ; Rocha, M ;
PUBLISHED: 2021, SOURCE: 24th International Conference on the Applications of Evolutionary Computation, EvoApplications 2021 held as Part of EvoStar 2021 in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), VOLUME: 12694 LNCS
INDEXED IN: Scopus CrossRef: 3
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