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TITLE: Leveraging Large Language Models on Assay Descriptions to Improve the Prediction of Inhibitors for Mycobacterium Tuberculosis
AUTHORS: Alves, Nuno; Osorio, Nuno S.; Pereira, Vitor; Rocha, Miguel ;
PUBLISHED: 2026, SOURCE: 18th International Work-Conference on Advances in Computational Intelligence-IWANN in ADVANCES IN COMPUTATIONAL INTELLIGENCE, IWANN 2025, PT I, VOLUME: 16008

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TITLE: Cellular and biochemical alterations induced by diesel oil in the brown alga Sargassum cymosum var. stenophyllum cultured in vitro Full Text
AUTHORS: Eva Regina Oliveira; Fernanda Ramlov; Éder Carlos Schmidt; Débora Tomazi; Claudia Marlene Bauer; Fernanda Pilatti; Rodolfo Moresco; Giulia Burle Costa; Sara Cardoso; Zenilda Laurita Bouzon; Paulo Antunes Horta; Miguel Rocha ; Marcelo Maraschin;
PUBLISHED: 2025, SOURCE: Chemosphere, VOLUME: 372

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TITLE: Comparative Assessment of Protein Large Language Models for Enzyme Commission Number Prediction Full Text
AUTHORS: Capela, Joao; Zimmermann Kogadeeva, Maria; van Dijk, Aalt D. J.; de Ridder, Dick; Dias, Oscar ; Rocha, Miguel ;
PUBLISHED: 2025, SOURCE: BMC BIOINFORMATICS, VOLUME: 26, ISSUE: 1

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TITLE: Evolutionary Algorithms for Metabolic Transformation through Multi-gene Knockout Optimization
AUTHORS: Sa, Bruno; Oliveira, Alexandre; Rocha, Miguel ;
PUBLISHED: 2025, SOURCE: 2025 Genetic and Evolutionary Computation Conference Companion-GECCO in PROCEEDINGS OF THE 2025 GENETIC AND EVOLUTIONARY COMPUTATION CONFERENCE, GECCO 2025

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TITLE: Machine and deep learning to predict viral fusion peptides
AUTHORS: Sequeira, A. M.; Rocha, M. ; Lousa, Diana;
PUBLISHED: 2025, SOURCE: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, VOLUME: 27

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TITLE: Predicting precursors of plant specialized metabolites using DeepMol automated machine learning
AUTHORS: Capela, Joao; Cheixo, Joao; de Ridder, Dick; Dias, Oscar ; Rocha, Miguel ;
PUBLISHED: 2025, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 22, ISSUE: 2

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TITLE: TROPPO: tissue-specific reconstruction and phenotype prediction using omics data
AUTHORS: Oliveira, Alexandre; Ferreira, Jorge; Vieira, Vitor; Sa, Bruno; Rocha, Miguel ;
PUBLISHED: 2025, SOURCE: BIOINFORMATICS ADVANCES, VOLUME: 5, ISSUE: 1

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