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TITLE: A systematic evaluation of deep learning methods for the prediction of drug synergy in cancer  Full Text
AUTHORS: Baptista, Delora; Ferreira, Pedro G. ; Rocha, Miguel ;
PUBLISHED: 2023, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 19, ISSUE: 3
INDEXED IN: Scopus WOS CrossRef: 3
2
TITLE: A Comparison of Different Compound Representations for Drug Sensitivity Prediction
AUTHORS: Baptista, Delora; Correia, Joao; Pereira, Bruno; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS
3
TITLE: A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale  Full Text
AUTHORS: Vieira, Vitor; Ferreira, Jorge; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 18, ISSUE: 6
INDEXED IN: Scopus WOS
4
TITLE: BioTMPy: A Deep Learning-Based Tool to Classify Biomedical Literature
AUTHORS: Alves, Nuno; Rodrigues, Ruben; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS
5
TITLE: Combinatorial Optimization of Succinate Production in Escherichia coli
AUTHORS: Pereira, Vitor ; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS
6
TITLE: Computational Methods for the Identification of Genetic Variants in Complex Diseases
AUTHORS: Antunes, Debora; Martins, Daniel; Correia, Fernanda; Rocha, Miguel ; Arrais, Joel P.;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS
7
TITLE: Computational Tools for the Analysis of 2D-Nuclear Magnetic Resonance Data
AUTHORS: Pereira, Bruno; Maraschin, Marcelo; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS
8
TITLE: Development of Deep Learning approaches to predict relationships between chemical structures and sweetness
AUTHORS: Capela, Joao; Correia, Joao; Pereira, Vitor ; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) / IEEE World Congress on Computational Intelligence (IEEE WCCI) / International Joint Conference on Neural Networks (IJCNN) / IEEE Congress on Evolutionary Computation (IEEE CEC) in 2022 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN), VOLUME: 2022-July
INDEXED IN: Scopus WOS
9
TITLE: Divergent magnetic resonance imaging atrophy patterns in Alzheimer?s disease and primary age-related tauopathy
AUTHORS: Quintas Neves, Miguel; Teylan, Merilee A.; Morais Ribeiro, Rafaela; Almeida, Francisco ; Mock, Charles N.; Kukull, Walter A.; Crary, John F.; Oliveira, Tiago Gil;
PUBLISHED: 2022, SOURCE: NEUROBIOLOGY OF AGING, VOLUME: 117
INDEXED IN: Scopus WOS
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TITLE: Evaluating molecular representations in machine learning models for drug response prediction and interpretability
AUTHORS: Baptista, Delora; Correia, Joao; Pereira, Bruno; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 19, ISSUE: 3
INDEXED IN: Scopus WOS
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