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TITLE: A diel multi-tissue genome-scale metabolic model of Vitis vinifera  Full Text
AUTHORS: Sampaio, Marta; Rocha, Miguel ; Dias, Oscar;
PUBLISHED: 2024, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 20, ISSUE: 10
INDEXED IN: Scopus WOS CrossRef
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TITLE: BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models
AUTHORS: Cruz, Fernando; Capela, Joao; Ferreira, Eugenio Campos; Rocha, Miguel ; Dias, Oscar ;
PUBLISHED: 2024, SOURCE: IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 21, ISSUE: 2
INDEXED IN: WOS CrossRef: 2
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TITLE: BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models
AUTHORS: Fernando Cruz; Joao Capela; Eugenio Campos Ferreira ; Miguel Rocha ; Oscar Dias ;
PUBLISHED: 2024, SOURCE: IEEE/ACM Transactions on Computational Biology and Bioinformatics, VOLUME: 21, ISSUE: 2
INDEXED IN: Scopus CrossRef: 1
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TITLE: Reconstruction of cell-specific models capturing the influence of metabolism on DNA methylation in cancer  Full Text
AUTHORS: Barata, Thnia; Pereira, Vitor ; das Neves, Ricardo Pires; Rocha, Miguel ;
PUBLISHED: 2024, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 170
INDEXED IN: Scopus WOS CrossRef
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TITLE: A systematic evaluation of deep learning methods for the prediction of drug synergy in cancer  Full Text
AUTHORS: Baptista, Delora; Ferreira, Pedro G. ; Rocha, Miguel ;
PUBLISHED: 2023, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 19, ISSUE: 3
INDEXED IN: Scopus WOS CrossRef: 19
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TITLE: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design
AUTHORS: Correia, Joao; Pereira, Vitor ; Rocha, Miguel ;
PUBLISHED: 2023, SOURCE: Genetic and Evolutionary Computation Conference (GECCO) in PROCEEDINGS OF THE 2023 GENETIC AND EVOLUTIONARY COMPUTATION CONFERENCE, GECCO 2023
INDEXED IN: Scopus WOS CrossRef
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TITLE: Preface
AUTHORS: Fdez Riverola, F; Rocha, M ; Mohamad, MS; Caraiman, S; Gil González, AB;
PUBLISHED: 2023, SOURCE: 16th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2022 in Lecture Notes in Networks and Systems, VOLUME: 553
INDEXED IN: Scopus
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TITLE: A Comparison of Different Compound Representations for Drug Sensitivity Prediction
AUTHORS: Baptista, Delora; Correia, Joao; Pereira, Bruno; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS CrossRef: 2
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TITLE: A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale
AUTHORS: Vieira, Vitor; Ferreira, Jorge; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 18, ISSUE: 6
INDEXED IN: Scopus WOS CrossRef: 10
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