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TITLE: Evidence of early genomic selection in Holstein Friesian across African and European ecosystems  Full Text
AUTHORS: Gao, Junxin; Gonzalez Prendes, Rayner; Liu, Ying; Kantanen, Juha; Ginja, Catarina ; Ghanem, Nasser; Kugonza, Donald Rugira; Makgahlela, Mahlako; Bovenhuis, Henk; Groenen, Martien A. M.; Crooijmans, Richard P. M. A.;
PUBLISHED: 2025, SOURCE: BMC GENOMICS, VOLUME: 26, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 1
IN MY: ORCID
2
TITLE: Unmapped reads from whole-genome sequencing data reveal pathogen diversity in European and African cattle breeds
AUTHORS: Daniil Ruvinskiy; Kisun Pokharel; Rodney Okwasiimire; Rayner Gonzalez-Prendes; Catarina Ginja ; Nasser Ghanem; Donald R Kugonza; Mahlako L Makgahlela; Heli Lindeberg; Melak Weldenegodguad; Juha Kantanen; Martijn Derks; Richard P.M.A Crooijmans;
PUBLISHED: 2025, SOURCE: Genomics, VOLUME: 117, ISSUE: 6
INDEXED IN: CrossRef
IN MY: ORCID
3
TITLE: Unmapped reads from whole-genome sequencing data reveal pathogen diversity in European and African cattle breeds
AUTHORS: Ruvinskiy, Daniil; Pokharel, Kisun; Okwasiimire, Rodney; Gonzalez Prendes, Rayner; Ginja, Catarina ; Ghanem, Nasser; Kugonza, Donald R.; Makgahlela, Mahlako L.; Lindeberg, Heli; Weldenegodguad, Melak; Kantanen, Juha; Derks, Martijn; Crooijmans, Richard P. M. A.;
PUBLISHED: 2025, SOURCE: GENOMICS, VOLUME: 117, ISSUE: 6
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
4
TITLE: Adipose gene expression profiles in Northern Finncattle, Mirandesa cattle, Yakutian cattle and commercial Holstein cattle  Full Text
AUTHORS: Ruvinskiy, Daniil; Amaral, Andreia; Weldenegodguad, Melak; Ammosov, Innokentyi; Honkatukia, Mervi; Lindeberg, Heli; Peippo, Jaana; Popov, Ruslan; Soppela, Paeivi; Stammler, Florian; Uimari, Pekka; Ginja, Catarina ; Kantanen, Juha; Pokharel, Kisun;
PUBLISHED: 2024, SOURCE: SCIENTIFIC REPORTS, VOLUME: 14, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
5
TITLE: Genome-wide association study identifies genetic variants underlying footrot in Portuguese Merino sheep
AUTHORS: Gaspar, Daniel; Ginja, Catarina ; Carolino, Nuno ; Leao, Celia; Monteiro, Helena; Tabuas, Lino; Branco, Sandra; Padre, Ludovina; Caetano, Pedro; Romao, Ricardo; Matos, Claudino; Ramos, Antonio Marcos; Bettencourt, Elisa; Usie, Ana;
PUBLISHED: 2024, SOURCE: BMC GENOMICS, VOLUME: 25, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
6
TITLE: Gut Microbiota Diversity of Local Egyptian Cattle Managed in Different Ecosystems  Full Text
AUTHORS: Aboshady, Hadeer M.; Gavriilidou, Asimenia; Ghanem, Nasser; Radwan, Mohamed A.; Elnahas, Ahmed; Agamy, Rania; Fahim, Nadia H.; Elsawy, Mohamed H.; Shaarawy, Al Moataz Bellah M.; Abdel Hafeez, Ahmed M.; Kantanen, Juha; Ginja, Catarina ; Makgahlela, Mahlako L.; Kugonza, Donald R.; Gonzalez Prendes, Rayner; Crooijmans, Richard P. M. A.;
PUBLISHED: 2024, SOURCE: ANIMALS, VOLUME: 14, ISSUE: 18
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
7
TITLE: Adipose gene expression profiles and their associations with adaptations in Northern Finncattle, Mirandesa cattle, Yakutian cattle and Holstein cattle
AUTHORS: Daniil Ruvinskiy; Andreia Amaral; Melak Weldenegodguad; Mervi Honkatukia; Heli Lindeberg; Jaana Peippo; Päivi Soppela; Florian Stammler; Pekka Uimari; Catarina Ginja ; Juha Kantanen; Kisun Pokharel;
PUBLISHED: 2023
INDEXED IN: CrossRef
IN MY: ORCID
8
TITLE: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
AUTHORS: Meadows, Jennifer R. S.; Kidd, Jeffrey M.; Wang, Guo Dong; Parker, Heidi G.; Schall, Peter Z.; Bianchi, Matteo; Christmas, Matthew J.; Bougiouri, Katia; Buckley, Reuben M.; Hitte, Christophe; Nguyen, Anthony K.; Wang, Chao; Jagannathan, Vidhya; Niskanen, Julia E.; Frantz, Laurent A. F.; Arumilli, Meharji; Hundi, Sruthi; Lindblad Toh, Kerstin; Ginja, Catarina ; Agustina, Kadek Karang; Andre, Catherine; Boyko, Adam R.; Davis, Brian W.; Droegemueller, Michaela; Feng, Xin Yao; Gkagkavouzis, Konstantinos; Iliopoulos, Giorgos; Harris, Alexander C.; Hytonen, Marjo K.; Kalthoff, Daniela C.; Liu, Yan Hu; Lymberakis, Petros; Poulakakis, Nikolaos; Pires, Ana Elisabete; Racimo, Fernando; Ramos Almodovar, Fabian; Savolainen, Peter; Venetsani, Semina; Tammen, Imke; Triantafyllidis, Alexandros; vonHoldt, Bridgett; Wayne, Robert K.; Larson, Greger; Nicholas, Frank W.; Lohi, Hannes; Leeb, Tosso; Zhang, Ya Ping; Ostrander, Elaine A.; ...More
PUBLISHED: 2023, SOURCE: GENOME BIOLOGY, VOLUME: 24, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 82
IN MY: ORCID
9
TITLE: Genome-wide assessment of the population structure and genetic diversity of four Portuguese native sheep breeds  Full Text
AUTHORS: Gaspar, Daniel; Usie, Ana; Leao, Celia; Guimaraes, Silvia; Pires, Ana Elisabete ; Matos, Claudino; Ramos, Antonio Marcos; Ginja, Catarina ;
PUBLISHED: 2023, SOURCE: FRONTIERS IN GENETICS, VOLUME: 14
INDEXED IN: Scopus WOS CrossRef: 4
IN MY: ORCID
10
TITLE: Iron age genomic data from Althiburos - Tunisia renew the debate on the origins of African taurine cattle
AUTHORS: Ginja, Catarina ; Guimaraes, Silvia; da Fonseca, Rute R.; Rasteiro, Rita; Rodriguez Varela, Ricardo; Simoes, Luciana G.; Sarmento, Cindy; Belarte, Maria Carme; Kallala, Nabil; Torres, Joan Ramon; Sanmarti, Joan; Arruda, Ana Margarida; Detry, Cleia ; Davis, Simon; Matos, Jose; Gotherstrom, Anders; Pires, Ana Elisabete; Valenzuela Lamas, Silvia;
PUBLISHED: 2023, SOURCE: ISCIENCE, VOLUME: 26, ISSUE: 7
INDEXED IN: Scopus WOS CrossRef: 7
IN MY: ORCID
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