António José Meireles Ribeiro


AuthID: R-000-W64

Confirmed Publications: 40



1
TITLE: Measuring catalytic mechanism similarity - a new approach to study enzyme function and evolution  Full Text
AUTHORS: Ribeiro, Antonio J. M. ; Riziotis, Ioannis G.; Borkakoti, Neera; Fernandes, Pedro A.; Ramos, Maria J.; Thornton, Janet M.;
PUBLISHED: 2025, SOURCE: FEBS JOURNAL, VOLUME: 292, ISSUE: 16
INDEXED IN: Scopus WOS CrossRef: 1
IN MY: ORCID | CIÊNCIAVITAE
2
TITLE: Paradigms of convergent evolution in enzymes  Full Text
AUTHORS: Ioannis G Riziotis; Jenny C Kafas; Gabriel Ong; Neera Borkakoti; António J M Ribeiro ; Janet M Thornton;
PUBLISHED: 2024, SOURCE: The FEBS Journal
INDEXED IN: CrossRef
IN MY: ORCID | CIÊNCIAVITAE
3
TITLE: Enzyme function and evolution through the lens of bioinformatics
AUTHORS: Antonio J M Ribeiro ; Ioannis G Riziotis; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2023, SOURCE: Biochemical Journal, VOLUME: 480, ISSUE: 22
INDEXED IN: CrossRef
IN MY: ORCID | CIÊNCIAVITAE
4
TITLE: EzMechanism: an automated tool to propose catalytic mechanisms of enzyme reactions
AUTHORS: Antonio J M Ribeiro ; Ioannis G Riziotis; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2023, SOURCE: Nature Methods, VOLUME: 20, ISSUE: 10
INDEXED IN: CrossRef: 1
IN MY: ORCID | CIÊNCIAVITAE
5
TITLE: The 3D Modules of Enzyme Catalysis: Deconstructing Active Sites into Distinct Functional Entities  Full Text
AUTHORS: Ioannis G Riziotis; António J.M Ribeiro ; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2023, SOURCE: Journal of Molecular Biology, VOLUME: 435, ISSUE: 20
INDEXED IN: CrossRef: 3
IN MY: ORCID | CIÊNCIAVITAE
6
TITLE: EzMechanism: An Automated Tool to Propose Catalytic Mechanisms of Enzyme Reactions
AUTHORS: Antonio J M Ribeiro ; Ioannis G Riziotis; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2022
INDEXED IN: CrossRef: 2
IN MY: ORCID | CIÊNCIAVITAE
7
TITLE: GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs  Full Text
AUTHORS: Charles A Santana; Sandro C Izidoro; Raquel C de Melo-Minardi; Jonathan D Tyzack; António J M Ribeiro ; Douglas E V Pires; Janet M Thornton; Sabrina de A. Silveira;
PUBLISHED: 2022, SOURCE: Nucleic Acids Research, VOLUME: 50, ISSUE: W1
INDEXED IN: CrossRef: 6
IN MY: ORCID | CIÊNCIAVITAE
8
TITLE: Using mechanism similarity to understand enzyme evolution  Full Text
AUTHORS: António J M Ribeiro ; Ioannis G Riziotis; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2022, SOURCE: Biophysical Reviews, VOLUME: 14, ISSUE: 6
INDEXED IN: CrossRef: 6
IN MY: ORCID | CIÊNCIAVITAE
9
TITLE: Conformational variation in enzyme catalysis: A structural study on catalytic residues
AUTHORS: Ioannis G Riziotis; António J M Ribeiro ; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2021
INDEXED IN: CrossRef
IN MY: ORCID | CIÊNCIAVITAE
10
TITLE: The Enzyme Portal: an integrative tool for enzyme information and analysis  Full Text
AUTHORS: Rossana Zaru; Joseph Onwubiko; Antonio J M Ribeiro ; Keeva Cochrane; Jonathan D Tyzack; Venkatesh Muthukrishnan; Lukas Pravda; Janet M Thornton; Claire O’Donovan; Sameer Velanker; Sandra Orchard; Andrew Leach; Maria J Martin;
PUBLISHED: 2021, SOURCE: The FEBS Journal, VOLUME: 289, ISSUE: 19
INDEXED IN: CrossRef: 2
IN MY: ORCID | CIÊNCIAVITAE
Page 1 of 4. Total results: 40.

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