António José Meireles Ribeiro


AuthID: R-000-W64

Confirmed Publications: 38



11
TITLE: Emerging concepts in pseudoenzyme classification, evolution, and signaling
AUTHORS: António J M Ribeiro ; Sayoni Das; Natalie Dawson; Rossana Zaru; Sandra Orchard; Janet M Thornton; Christine Orengo; Elton Zeqiraj; James M Murphy; Patrick A Eyers;
PUBLISHED: 2019, SOURCE: Science Signaling, VOLUME: 12, ISSUE: 594
INDEXED IN: CrossRef: 77
IN MY: ORCID
12
TITLE: Exploring Chemical Biosynthetic Design Space with Transform-MinER
AUTHORS: Jonathan D Tyzack; Antonio J M Ribeiro ; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2019, SOURCE: ACS Synthetic Biology, VOLUME: 8, ISSUE: 11
INDEXED IN: CrossRef: 15
IN MY: ORCID
13
TITLE: Identifying pseudoenzymes using functional annotation: pitfalls of common practice  Full Text
AUTHORS: Antonio J M Ribeiro ; Jonathan D Tyzack; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2019, SOURCE: The FEBS Journal, VOLUME: 287, ISSUE: 19
INDEXED IN: CrossRef: 19
IN MY: ORCID
14
TITLE: PDBe-KB: a community-driven resource for structural and functional annotations  Full Text
AUTHORS: Mihaly Varadi; John Berrisford; Mandar Deshpande; Sreenath S Nair; Aleksandras Gutmanas; David Armstrong; Lukas Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J Barton; Karel Berka; Tom Blundell; Neera Borkakoti; Jose Dana; Sayoni Das; Sucharita Dey; Patrizio Di Micco; Franca Fraternali; Toby Gibson; Manuela Helmer-Citterich; David Hoksza; Liang-Chin Huang; Rishabh Jain; Harry Jubb; Christos Kannas; Natarajan Kannan; Jaroslav Koca; Radoslav Krivak; Manjeet Kumar; Emmanuel D Levy; Madeira, F; Madhusudhan, MS; Henry J Martell; Stuart MacGowan; Jake E McGreig; Saqib Mir; Abhik Mukhopadhyay; Luca Parca; Typhaine Paysan-Lafosse; Leandro Radusky; Antonio Ribeiro ; Luis Serrano; Ian Sillitoe; Gulzar Singh; Petr Skoda; Radka Svobodova; Jonathan Tyzack; Alfonso Valencia; Eloy Villasclaras Fernandez; Wim Vranken; Mark Wass; Janet Thornton; Michael Sternberg; Christine Orengo; Sameer Velankar; ...More
PUBLISHED: 2019, SOURCE: Nucleic Acids Research, VOLUME: 48, ISSUE: D1
INDEXED IN: CrossRef: 80
IN MY: ORCID
15
TITLE: Ranking Enzyme Structures in the PDB by Bound Ligand Similarity to Biological Substrates
AUTHORS: Jonathan D Tyzack; Laurent Fernando; Antonio J.M Ribeiro ; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2018, SOURCE: Structure, VOLUME: 26, ISSUE: 4
INDEXED IN: CrossRef: 23
IN MY: ORCID
16
TITLE: Transform-MinER: transforming molecules in enzyme reactions  Full Text
AUTHORS: Jonathan D Tyzack; Antonio J M Ribeiro ; Neera Borkakoti; Janet M Thornton;
PUBLISHED: 2018, SOURCE: Bioinformatics, VOLUME: 34, ISSUE: 20
INDEXED IN: CrossRef: 10
IN MY: ORCID
17
TITLE: Application of quantum mechanics/molecular mechanics methods in the study of enzymatic reaction mechanisms. Application of QM/MM methods  Full Text
AUTHORS: Sérgio F. Sousa ; Ribeiro, AJM ; Neves, Rui P. P. ; Bras, NF ; Cerqueira, NMFSA ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, VOLUME: 7, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef: 124
IN MY: ORCID
18
TITLE: Benchmarking of density functionals for the kinetics and thermodynamics of the hydrolysis of glycosidic bonds catalyzed by glycosidases. PEREIRA et al.  Full Text
AUTHORS: Pereira, AT; Ribeiro, AJM ; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, VOLUME: 117, ISSUE: 18
INDEXED IN: Scopus WOS CrossRef: 34
IN MY: ORCID
19
TITLE: Binding free energy calculations on E-selectin complexes with sLe(x) oligosaccharide analogs  Full Text
AUTHORS: Barra, PA; Ribeiro, AJM ; Ramos, MJ ; Jimenez, VA; Alderete, JB; Fernandes, PA ;
PUBLISHED: 2017, SOURCE: CHEMICAL BIOLOGY & DRUG DESIGN, VOLUME: 89, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 7
IN MY: ORCID
20
TITLE: cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches  Full Text
AUTHORS: Martin Herranz, DE; Ribeiro, AJM ; Krueger, F; Thornton, JM; Reik, W; Stubbs, TM;
PUBLISHED: 2017, SOURCE: NUCLEIC ACIDS RESEARCH, VOLUME: 45, ISSUE: 20
INDEXED IN: WOS CrossRef: 11
IN MY: ORCID
Page 2 of 4. Total results: 38.

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