Rafael Sousa Costa
AuthID: R-000-F5Z
1
TITLE: Integrating statistical significance and discriminative power in pattern discovery Full Text
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2025, SOURCE: KNOWLEDGE-BASED SYSTEMS, VOLUME: 316
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2025, SOURCE: KNOWLEDGE-BASED SYSTEMS, VOLUME: 316
2
TITLE: A Physics-Informed Neural Network (Pinn) Framework for Generic Bioreactor Modelling
AUTHORS: Monesh Kumar; José Pinto; Ekaterina Moskovkina; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
AUTHORS: Monesh Kumar; José Pinto; Ekaterina Moskovkina; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
3
TITLE: A Physics-Informed Neural Network (PINN) framework for generic bioreactor modelling
AUTHORS: Thirugnanasambandam, Monesh Kumar; Pinto, Jose; Moskovkina, Ekaterina; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2025, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 203
AUTHORS: Thirugnanasambandam, Monesh Kumar; Pinto, Jose; Moskovkina, Ekaterina; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2025, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 203
4
TITLE: Bioprocess Control with Physics-Informed Neural Networks: Driving Microbiome Evolution Toward High Polyhydroxyalkanoates Production Capacity
AUTHORS: Marta Catalão; José Pinto; Cristiana A.V Torres; Filomena Freitas; Maria A.M Reis; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
AUTHORS: Marta Catalão; José Pinto; Cristiana A.V Torres; Filomena Freitas; Maria A.M Reis; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
5
TITLE: TriSig: Evaluating the statistical significance of triclusters
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: PATTERN RECOGNITION, VOLUME: 149
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: PATTERN RECOGNITION, VOLUME: 149
6
TITLE: Pattern-centric transformation of omics data grounded on discriminative gene associations aids predictive tasks in TCGA while ensuring interpretability
AUTHORS: Patricio, Andre; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: BIOTECHNOLOGY AND BIOENGINEERING
AUTHORS: Patricio, Andre; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: BIOTECHNOLOGY AND BIOENGINEERING
7
TITLE: SBML2HYB: a Python interface for SBML compatible hybrid modeling
AUTHORS: Pinto, Jose; Costa, Rafael S.; Alexandre, Leonardo; Ramos, Joao; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 1
AUTHORS: Pinto, Jose; Costa, Rafael S.; Alexandre, Leonardo; Ramos, Joao; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 1
8
TITLE: A General Hybrid Modeling Framework for Systems Biology Applications: Combining Mechanistic Knowledge with Deep Neural Networks under the SBML Standard
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: AI, VOLUME: 4, ISSUE: 1
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: AI, VOLUME: 4, ISSUE: 1
9
TITLE: On the challenges of predicting treatment response in Hodgkin’s Lymphoma using transcriptomic data
AUTHORS: André Patrício; Rafael Costa; Rui Henriques;
PUBLISHED: 2023, SOURCE: BMC Medical Genomics, VOLUME: 16, ISSUE: S1
AUTHORS: André Patrício; Rafael Costa; Rui Henriques;
PUBLISHED: 2023, SOURCE: BMC Medical Genomics, VOLUME: 16, ISSUE: S1
10
TITLE: Hybrid Deep Modeling of a GS115 (Mut+) Pichia pastoris Culture with State-Space Reduction
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FERMENTATION-BASEL, VOLUME: 9, ISSUE: 7
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FERMENTATION-BASEL, VOLUME: 9, ISSUE: 7
