Rafael Sousa Costa
AuthID: R-000-F5Z
1
TITLE: A General Hybrid Modeling Framework for Systems Biology Applications: Combining Mechanistic Knowledge with Deep Neural Networks under the SBML Standard Full Text
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: AI, VOLUME: 4, ISSUE: 1
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: AI, VOLUME: 4, ISSUE: 1
INDEXED IN: 
WOS
WOS2
TITLE: On the challenges of predicting treatment response in Hodgkin's Lymphoma using transcriptomic data Full Text
AUTHORS: Patricio, Andre; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2023, SOURCE: 20th Asia Pacific Bioinformatics Conference (APBC) - Bioinformatics in BMC MEDICAL GENOMICS, VOLUME: 16, ISSUE: SUPPL 1
AUTHORS: Patricio, Andre; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2023, SOURCE: 20th Asia Pacific Bioinformatics Conference (APBC) - Bioinformatics in BMC MEDICAL GENOMICS, VOLUME: 16, ISSUE: SUPPL 1
INDEXED IN: WOS
WOS3
TITLE: Hybrid deep modeling of a CHO-K1 fed-batch process: combining first-principles with deep neural networks
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Rossell, Sergio; Dumas, Patrick; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, VOLUME: 11
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Rossell, Sergio; Dumas, Patrick; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, VOLUME: 11
INDEXED IN: 
Scopus WOS
Scopus WOS4
TITLE: Enrichment analysis on regulatory subspaces: A novel direction for the superior description of cellular responses to SARS-CoV-2 Full Text
AUTHORS: Rodrigues, Pedro; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 146
AUTHORS: Rodrigues, Pedro; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 146
INDEXED IN: Scopus WOS
Scopus WOS5
TITLE: A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks Full Text
AUTHORS: Pinto, Jose; Mestre, Mykaella; Ramos, J.; Costa, Rafael S.; Striedner, Gerald; Oliveira, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 165
AUTHORS: Pinto, Jose; Mestre, Mykaella; Ramos, J.; Costa, Rafael S.; Striedner, Gerald; Oliveira, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 165
INDEXED IN: Scopus WOS
Scopus WOS6
TITLE: Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions Full Text
AUTHORS: Patricio, Andre; Lopes, Marta B. ; Costa, Pedro Reis; Costa, Rafael S.; Henriques, Rui; Vinga, Susana;
PUBLISHED: 2022, SOURCE: TOXINS, VOLUME: 14, ISSUE: 10
AUTHORS: Patricio, Andre; Lopes, Marta B. ; Costa, Pedro Reis; Costa, Rafael S.; Henriques, Rui; Vinga, Susana;
PUBLISHED: 2022, SOURCE: TOXINS, VOLUME: 14, ISSUE: 10
7
TITLE: DISA tool: Discriminative and informative subspace assessment with categorical and numerical outcomes Full Text
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 10
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 10
INDEXED IN: Scopus WOS
Scopus WOS8
TITLE: DISA tool: Discriminative and informative subspace assessment with categorical and numerical outcomes Full Text
AUTHORS: Alexandre, Leonardo; Costa, Rafael; Henriques, Rui;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 10
AUTHORS: Alexandre, Leonardo; Costa, Rafael; Henriques, Rui;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 10
INDEXED IN: WOS
WOS9
TITLE: Predicting Postoperative Complications in Cancer Patients: A Survey Bridging Classical and Machine Learning Contributions to Postsurgical Risk Analysis Full Text
AUTHORS: Goncalves, DM; Henriques, R; Costa, RS;
PUBLISHED: 2021, SOURCE: CANCERS, VOLUME: 13, ISSUE: 13
AUTHORS: Goncalves, DM; Henriques, R; Costa, RS;
PUBLISHED: 2021, SOURCE: CANCERS, VOLUME: 13, ISSUE: 13
INDEXED IN: WOS
WOS10
TITLE: Mining Pre-Surgical Patterns Able to Discriminate Post-Surgical Outcomes in the Oncological Domain Full Text
AUTHORS: Alexandre, L; Costa, RS; Santos, LL; Henriques, R;
PUBLISHED: 2021, SOURCE: IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, VOLUME: 25, ISSUE: 7
AUTHORS: Alexandre, L; Costa, RS; Santos, LL; Henriques, R;
PUBLISHED: 2021, SOURCE: IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, VOLUME: 25, ISSUE: 7
INDEXED IN: WOS
WOS