Rafael Sousa Costa
AuthID: R-000-F5Z
1
TITLE: Integrating statistical significance and discriminative power in pattern discovery Full Text
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2025, SOURCE: KNOWLEDGE-BASED SYSTEMS, VOLUME: 316
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2025, SOURCE: KNOWLEDGE-BASED SYSTEMS, VOLUME: 316
2
TITLE: A Physics-Informed Neural Network (Pinn) Framework for Generic Bioreactor Modelling
AUTHORS: Monesh Kumar; José Pinto; Ekaterina Moskovkina; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
AUTHORS: Monesh Kumar; José Pinto; Ekaterina Moskovkina; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
3
TITLE: A Physics-Informed Neural Network (PINN) framework for generic bioreactor modelling
AUTHORS: Thirugnanasambandam, Monesh Kumar; Pinto, Jose; Moskovkina, Ekaterina; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2025, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 203
AUTHORS: Thirugnanasambandam, Monesh Kumar; Pinto, Jose; Moskovkina, Ekaterina; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2025, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 203
4
TITLE: Bioprocess Control with Physics-Informed Neural Networks: Driving Microbiome Evolution Toward High Polyhydroxyalkanoates Production Capacity
AUTHORS: Marta Catalão; José Pinto; Cristiana A.V Torres; Filomena Freitas; Maria A.M Reis; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
AUTHORS: Marta Catalão; José Pinto; Cristiana A.V Torres; Filomena Freitas; Maria A.M Reis; Rafael Costa; Rui Oliveira;
PUBLISHED: 2025
5
TITLE: Bottlenecks in advancing and applying multiomic data integration-common data resources as rate-limiting drivers-the high-impact use case of atherosclerotic cardiovascular disease
AUTHORS: Bezzina Wettinger, Stephanie; Karaduzovic Hadziabdic, Kanita; Attard, Ritienne; Farrugia, Rosienne; Wolford, Brooke N.; Chierici, Marco; Jurman, Giuseppe; Alexiou, Panagiotis; Penalvo, Jose L.; Costa, Rafael S.; Basilio, Jose; Sabovcik, Frantisek; Vitorino, Rui; Schmid, Johannes A.; Shigdel, Rajesh; Vilne, Baiba; Hatzigeorgiou, Artemis G.; Sopic, Miron; Devaux, Yvan; Magni, Paolo; ...More
PUBLISHED: 2025, SOURCE: BRIEFINGS IN BIOINFORMATICS, VOLUME: 26, ISSUE: 5
AUTHORS: Bezzina Wettinger, Stephanie; Karaduzovic Hadziabdic, Kanita; Attard, Ritienne; Farrugia, Rosienne; Wolford, Brooke N.; Chierici, Marco; Jurman, Giuseppe; Alexiou, Panagiotis; Penalvo, Jose L.; Costa, Rafael S.; Basilio, Jose; Sabovcik, Frantisek; Vitorino, Rui; Schmid, Johannes A.; Shigdel, Rajesh; Vilne, Baiba; Hatzigeorgiou, Artemis G.; Sopic, Miron; Devaux, Yvan; Magni, Paolo; ...More
PUBLISHED: 2025, SOURCE: BRIEFINGS IN BIOINFORMATICS, VOLUME: 26, ISSUE: 5
6
TITLE: Bioprocess model-predictive control with physics-informed neural networks: Driving microbiome evolution toward high polyhydroxyalkanoates production capacity Full Text
AUTHORS: Catalao, Marta; Pinto, Jose; Torres, Cristiana A. V.; Freitas, Filomena; Reis, Maria A. M.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2025, SOURCE: JOURNAL OF PROCESS CONTROL, VOLUME: 156
AUTHORS: Catalao, Marta; Pinto, Jose; Torres, Cristiana A. V.; Freitas, Filomena; Reis, Maria A. M.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2025, SOURCE: JOURNAL OF PROCESS CONTROL, VOLUME: 156
7
TITLE: HYBpy: A web-based framework for hybrid modeling of biological systems
AUTHORS: Pedreira, Jose; Pinto, Jose; Goncalves, Daniel; Barahona, Pedro; Oliveira, Rui; Costa, Rafael S.;
PUBLISHED: 2025, SOURCE: DIGITAL CHEMICAL ENGINEERING, VOLUME: 17
AUTHORS: Pedreira, Jose; Pinto, Jose; Goncalves, Daniel; Barahona, Pedro; Oliveira, Rui; Costa, Rafael S.;
PUBLISHED: 2025, SOURCE: DIGITAL CHEMICAL ENGINEERING, VOLUME: 17
8
TITLE: TriSig: Evaluating the statistical significance of triclusters
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: PATTERN RECOGNITION, VOLUME: 149
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: PATTERN RECOGNITION, VOLUME: 149
9
TITLE: Pattern-centric transformation of omics data grounded on discriminative gene associations aids predictive tasks in TCGA while ensuring interpretability
AUTHORS: Patricio, Andre; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: BIOTECHNOLOGY AND BIOENGINEERING
AUTHORS: Patricio, Andre; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2024, SOURCE: BIOTECHNOLOGY AND BIOENGINEERING
10
TITLE: SBML2HYB: a Python interface for SBML compatible hybrid modeling
AUTHORS: Pinto, Jose; Costa, Rafael S.; Alexandre, Leonardo; Ramos, Joao; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 1
AUTHORS: Pinto, Jose; Costa, Rafael S.; Alexandre, Leonardo; Ramos, Joao; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 1
