Rafael Sousa Costa
AuthID: R-000-F5Z
11
TITLE: Predicting metabolic fluxes from omics data via machine learning: Moving from knowledge-driven towards data-driven approaches
AUTHORS: Daniel Gonçalves; Rui Henriques; Rafael Costa;
PUBLISHED: 2023, SOURCE: Computational and Structural Biotechnology Journal, VOLUME: 21
AUTHORS: Daniel Gonçalves; Rui Henriques; Rafael Costa;
PUBLISHED: 2023, SOURCE: Computational and Structural Biotechnology Journal, VOLUME: 21
12
TITLE: Pattern-centric transformation of omics-data sources grounded on multi-wise gene associations aids predictive tasks in TCGA while ensuring interpretability
AUTHORS: André Patrício; Rafael S Costa; Rui Henriques;
PUBLISHED: 2023
AUTHORS: André Patrício; Rafael S Costa; Rui Henriques;
PUBLISHED: 2023
13
TITLE: A General SBML Compatible Hybrid Modeling Framework: Combining Biochemical Mechanisms with Deep Neural Networks for Systems Biology Applications
AUTHORS: José Pinto; João R C Ramos; Rafael S Costa; Rui Oliveira;
PUBLISHED: 2023
AUTHORS: José Pinto; João R C Ramos; Rafael S Costa; Rui Oliveira;
PUBLISHED: 2023
14
TITLE: IPOscore: An interactive web-based platform for postoperative surgical complications analysis and prediction in the oncology domain Full Text
AUTHORS: Mochão, H; Gonçalves, D; Alexandre, L; Castro, C; Valério, D; Barahona, P; Moreira Gonçalves, D; Costa, PMD; Henriques, R; Santos, LL; Costa, RS;
PUBLISHED: 2022, SOURCE: Computer Methods and Programs in Biomedicine, VOLUME: 219
AUTHORS: Mochão, H; Gonçalves, D; Alexandre, L; Castro, C; Valério, D; Barahona, P; Moreira Gonçalves, D; Costa, PMD; Henriques, R; Santos, LL; Costa, RS;
PUBLISHED: 2022, SOURCE: Computer Methods and Programs in Biomedicine, VOLUME: 219
15
TITLE: Enrichment analysis on regulatory subspaces: A novel direction for the superior description of cellular responses to SARS-CoV-2
AUTHORS: Rodrigues, Pedro; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 146
AUTHORS: Rodrigues, Pedro; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 146
16
TITLE: Context-situated visualization of biclusters to aid decisions: going beyond subspaces with parallel coordinates
AUTHORS: Gonçalves, D; Costa, RS; Henriques, R;
PUBLISHED: 2022, SOURCE: 16th International Conference on Advanced Visual Interfaces, AVI 2022 in ACM International Conference Proceeding Series
AUTHORS: Gonçalves, D; Costa, RS; Henriques, R;
PUBLISHED: 2022, SOURCE: 16th International Conference on Advanced Visual Interfaces, AVI 2022 in ACM International Conference Proceeding Series
17
TITLE: A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks
AUTHORS: Pinto, Jose; Mestre, Mykaella; Ramos, J.; Costa, Rafael S.; Striedner, Gerald; Oliveira, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 165
AUTHORS: Pinto, Jose; Mestre, Mykaella; Ramos, J.; Costa, Rafael S.; Striedner, Gerald; Oliveira, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS & CHEMICAL ENGINEERING, VOLUME: 165
18
TITLE: Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions Full Text
AUTHORS: Patricio, Andre; Lopes, Marta B. ; Costa, Pedro Reis; Costa, Rafael S.; Henriques, Rui; Vinga, Susana;
PUBLISHED: 2022, SOURCE: TOXINS, VOLUME: 14, ISSUE: 10
AUTHORS: Patricio, Andre; Lopes, Marta B. ; Costa, Pedro Reis; Costa, Rafael S.; Henriques, Rui; Vinga, Susana;
PUBLISHED: 2022, SOURCE: TOXINS, VOLUME: 14, ISSUE: 10
19
TITLE: DISA tool: Discriminative and informative subspace assessment with categorical and numerical outcomes
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 10
AUTHORS: Alexandre, Leonardo; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 10
20
TITLE: Modeling and optimization of bioreactor processes
AUTHORS: Pinto, J; Antunes, J; Ramos, J; Costa, RS; Oliveira, R;
PUBLISHED: 2022, SOURCE: Current Developments in Biotechnology and Bioengineering: Advances in Bioprocess Engineering
AUTHORS: Pinto, J; Antunes, J; Ramos, J; Costa, RS; Oliveira, R;
PUBLISHED: 2022, SOURCE: Current Developments in Biotechnology and Bioengineering: Advances in Bioprocess Engineering
