Rafael Sousa Costa
AuthID: R-000-F5Z
11
TITLE: A General Hybrid Modeling Framework for Systems Biology Applications: Combining Mechanistic Knowledge with Deep Neural Networks under the SBML Standard
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: AI, VOLUME: 4, ISSUE: 1
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: AI, VOLUME: 4, ISSUE: 1
12
TITLE: On the challenges of predicting treatment response in Hodgkin’s Lymphoma using transcriptomic data
AUTHORS: André Patrício; Rafael Costa; Rui Henriques;
PUBLISHED: 2023, SOURCE: BMC Medical Genomics, VOLUME: 16, ISSUE: S1
AUTHORS: André Patrício; Rafael Costa; Rui Henriques;
PUBLISHED: 2023, SOURCE: BMC Medical Genomics, VOLUME: 16, ISSUE: S1
13
TITLE: Hybrid Deep Modeling of a GS115 (Mut+) Pichia pastoris Culture with State-Space Reduction
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FERMENTATION-BASEL, VOLUME: 9, ISSUE: 7
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FERMENTATION-BASEL, VOLUME: 9, ISSUE: 7
14
TITLE: An Overview of Mathematical Modelling in Cancer Research: Fractional Calculus as Modelling Tool
AUTHORS: Vieira, Lourenco Corte; Costa, Rafael S.; Valerio, Duarte ;
PUBLISHED: 2023, SOURCE: FRACTAL AND FRACTIONAL, VOLUME: 7, ISSUE: 8
AUTHORS: Vieira, Lourenco Corte; Costa, Rafael S.; Valerio, Duarte ;
PUBLISHED: 2023, SOURCE: FRACTAL AND FRACTIONAL, VOLUME: 7, ISSUE: 8
15
TITLE: Hybrid deep modeling of a CHO-K1 fed-batch process: combining first-principles with deep neural networks
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Rossell, Sergio; Dumas, Patrick; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, VOLUME: 11
AUTHORS: Pinto, Jose; Ramos, Joao R. C.; Costa, Rafael S.; Rossell, Sergio; Dumas, Patrick; Oliveira, Rui;
PUBLISHED: 2023, SOURCE: FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, VOLUME: 11
16
TITLE: Predicting metabolic fluxes from omics data via machine learning: Moving from knowledge-driven towards data-driven approaches
AUTHORS: Daniel Gonçalves; Rui Henriques; Rafael Costa;
PUBLISHED: 2023, SOURCE: Computational and Structural Biotechnology Journal, VOLUME: 21
AUTHORS: Daniel Gonçalves; Rui Henriques; Rafael Costa;
PUBLISHED: 2023, SOURCE: Computational and Structural Biotechnology Journal, VOLUME: 21
17
TITLE: Pattern-centric transformation of omics-data sources grounded on multi-wise gene associations aids predictive tasks in TCGA while ensuring interpretability
AUTHORS: André Patrício; Rafael S Costa; Rui Henriques;
PUBLISHED: 2023
AUTHORS: André Patrício; Rafael S Costa; Rui Henriques;
PUBLISHED: 2023
18
TITLE: A General SBML Compatible Hybrid Modeling Framework: Combining Biochemical Mechanisms with Deep Neural Networks for Systems Biology Applications
AUTHORS: José Pinto; João R C Ramos; Rafael S Costa; Rui Oliveira;
PUBLISHED: 2023
AUTHORS: José Pinto; João R C Ramos; Rafael S Costa; Rui Oliveira;
PUBLISHED: 2023
19
TITLE: IPOscore: An interactive web-based platform for postoperative surgical complications analysis and prediction in the oncology domain Full Text
AUTHORS: Mochão, H; Gonçalves, D; Alexandre, L; Castro, C; Valério, D ; Barahona, P; Moreira Gonçalves, D; Costa, PMD; Henriques, R; Santos, LL; Costa, RS;
PUBLISHED: 2022, SOURCE: Computer Methods and Programs in Biomedicine, VOLUME: 219
AUTHORS: Mochão, H; Gonçalves, D; Alexandre, L; Castro, C; Valério, D ; Barahona, P; Moreira Gonçalves, D; Costa, PMD; Henriques, R; Santos, LL; Costa, RS;
PUBLISHED: 2022, SOURCE: Computer Methods and Programs in Biomedicine, VOLUME: 219
20
TITLE: Enrichment analysis on regulatory subspaces: A novel direction for the superior description of cellular responses to SARS-CoV-2
AUTHORS: Rodrigues, Pedro; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 146
AUTHORS: Rodrigues, Pedro; Costa, Rafael S.; Henriques, Rui;
PUBLISHED: 2022, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 146
