Kristof Theys
AuthID: R-006-KPK
1
TITLE: Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal
AUTHORS: Seabra, Sofia G.; Libin, Pieter J. K.; Theys, Kristof; Zhukova, Anna; Potter, Barney, I; Nebenzahl Guimaraes, Hanna; Gorbalenya, Alexander E.; Sidorov, Igor A.; Pimentel, Victor; Pingarilho, Marta; de Vasconcelos, Ana T. R.; Dellicour, Simon; Khouri, Ricardo; Gascuel, Olivier; Vandamme, Anne Mieke; Baele, Guy; Cuypers, Lize; Abecasis, Ana B.;
PUBLISHED: 2022, SOURCE: VIRUS EVOLUTION, VOLUME: 8, ISSUE: 1
AUTHORS: Seabra, Sofia G.; Libin, Pieter J. K.; Theys, Kristof; Zhukova, Anna; Potter, Barney, I; Nebenzahl Guimaraes, Hanna; Gorbalenya, Alexander E.; Sidorov, Igor A.; Pimentel, Victor; Pingarilho, Marta; de Vasconcelos, Ana T. R.; Dellicour, Simon; Khouri, Ricardo; Gascuel, Olivier; Vandamme, Anne Mieke; Baele, Guy; Cuypers, Lize; Abecasis, Ana B.;
PUBLISHED: 2022, SOURCE: VIRUS EVOLUTION, VOLUME: 8, ISSUE: 1
INDEXED IN: 
WOS
WOS2
TITLE: Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations Full Text
AUTHORS: Marta Pingarilho; Victor Pimentel; Isabel Diogo; Sandra Fernandes; Mafalda Miranda; Andrea Pineda Pena; Pieter Libin; Kristof Theys; Rosario R O O. Martins; Anne Mieke Vandamme; Ricardo Camacho; Perpetua Gomes; Ana Abecasis;
PUBLISHED: 2020, SOURCE: VIRUSES-BASEL, VOLUME: 12, ISSUE: 11
AUTHORS: Marta Pingarilho; Victor Pimentel; Isabel Diogo; Sandra Fernandes; Mafalda Miranda; Andrea Pineda Pena; Pieter Libin; Kristof Theys; Rosario R O O. Martins; Anne Mieke Vandamme; Ricardo Camacho; Perpetua Gomes; Ana Abecasis;
PUBLISHED: 2020, SOURCE: VIRUSES-BASEL, VOLUME: 12, ISSUE: 11
INDEXED IN: 
Scopus WOS
Scopus WOS3
TITLE: VIRULIGN: fast codon-correct alignment and annotation of viral genomes Full Text
AUTHORS: Pieter J K Libin; Koen Deforche; Ana B Abecasis; Kristof Theys;
PUBLISHED: 2019, SOURCE: BIOINFORMATICS, VOLUME: 35, ISSUE: 10
AUTHORS: Pieter J K Libin; Koen Deforche; Ana B Abecasis; Kristof Theys;
PUBLISHED: 2019, SOURCE: BIOINFORMATICS, VOLUME: 35, ISSUE: 10
INDEXED IN: Scopus WOS
Scopus WOS4
TITLE: A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes Full Text
AUTHORS: Vagner Fonseca; Pieter J K Libin; Kristof Theys; Nuno R Faria; Marcio R T Nunes; Maria I Restovic; Murilo Freire; Marta Giovanetti; Lize Cuypers; Ann Nowe; Ana Abecasis; Koen Deforche; Gilberto A Santiago; Isadora C de Siqueira; Emmanuel J San; Kaliane C B Machado; Vasco Azevedo; Ana Maria Bispo de Filippis; Rivaldo Venancio da Cunha; Oliver G Pybus; ...More
PUBLISHED: 2019, SOURCE: PLOS NEGLECTED TROPICAL DISEASES, VOLUME: 13, ISSUE: 5
AUTHORS: Vagner Fonseca; Pieter J K Libin; Kristof Theys; Nuno R Faria; Marcio R T Nunes; Maria I Restovic; Murilo Freire; Marta Giovanetti; Lize Cuypers; Ann Nowe; Ana Abecasis; Koen Deforche; Gilberto A Santiago; Isadora C de Siqueira; Emmanuel J San; Kaliane C B Machado; Vasco Azevedo; Ana Maria Bispo de Filippis; Rivaldo Venancio da Cunha; Oliver G Pybus; ...More
PUBLISHED: 2019, SOURCE: PLOS NEGLECTED TROPICAL DISEASES, VOLUME: 13, ISSUE: 5
INDEXED IN: Scopus WOS
Scopus WOS5
TITLE: An Evolutionary Model-Based Approach To Quantify the Genetic Barrier to Drug Resistance in Fast-Evolving Viruses and Its Application to HIV-1 Subtypes and Integrase Inhibitors
AUTHORS: Kristof Theys; Pieter J K Libin; Kristel Van Laethem; Ana B Abecasis;
PUBLISHED: 2019, SOURCE: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, VOLUME: 63, ISSUE: 8
AUTHORS: Kristof Theys; Pieter J K Libin; Kristel Van Laethem; Ana B Abecasis;
PUBLISHED: 2019, SOURCE: ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, VOLUME: 63, ISSUE: 8
INDEXED IN: Scopus WOS
Scopus WOS6
TITLE: Drivers of HIV-1 transmission: The Portuguese case
AUTHORS: Pineda Peña, AC; Pingarilho, M; Li, G; Vrancken, B; Libin, P; Gomes, P; Camacho, RJ; Theys, K; Abecasis, AB;
PUBLISHED: 2019, SOURCE: PLoS ONE, VOLUME: 14, ISSUE: 9
AUTHORS: Pineda Peña, AC; Pingarilho, M; Li, G; Vrancken, B; Libin, P; Gomes, P; Camacho, RJ; Theys, K; Abecasis, AB;
PUBLISHED: 2019, SOURCE: PLoS ONE, VOLUME: 14, ISSUE: 9
INDEXED IN: Scopus
Scopus7
TITLE: Drivers of HIV-1 transmission: The Portuguese case Full Text
AUTHORS: Andrea Clemencia Pineda Pena; Marta Pingarilho; Guangdi D Li; Bram Vrancken; Pieter Libin; Perpetua Gomes; Ricardo Jorge Camacho; Kristof Theys; Ana Barroso Abecasis;
PUBLISHED: 2019, SOURCE: PLOS ONE, VOLUME: 14, ISSUE: 9
AUTHORS: Andrea Clemencia Pineda Pena; Marta Pingarilho; Guangdi D Li; Bram Vrancken; Pieter Libin; Perpetua Gomes; Ricardo Jorge Camacho; Kristof Theys; Ana Barroso Abecasis;
PUBLISHED: 2019, SOURCE: PLOS ONE, VOLUME: 14, ISSUE: 9
INDEXED IN: WOS
WOS8
TITLE: The impact of HIV-1 within-host evolution on transmission dynamics Full Text
AUTHORS: Kristof Theys; Pieter Libin; Andrea Clemencia Pineda Pena; Ann Nowe; Anne Mieke Vandamme; Ana B Abecasis;
PUBLISHED: 2018, SOURCE: CURRENT OPINION IN VIROLOGY, VOLUME: 28
AUTHORS: Kristof Theys; Pieter Libin; Andrea Clemencia Pineda Pena; Ann Nowe; Anne Mieke Vandamme; Ana B Abecasis;
PUBLISHED: 2018, SOURCE: CURRENT OPINION IN VIROLOGY, VOLUME: 28
INDEXED IN: Scopus WOS
Scopus WOS9
TITLE: HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012 Full Text
AUTHORS: Andrea Clemencia Pineda Pena; Kristof Theys; Dora C Stylianou; Ioannis Demetriades; Ana B Abecasis; Leondios G Kostrikis;
PUBLISHED: 2018, SOURCE: SCIENTIFIC REPORTS, VOLUME: 8
AUTHORS: Andrea Clemencia Pineda Pena; Kristof Theys; Dora C Stylianou; Ioannis Demetriades; Ana B Abecasis; Leondios G Kostrikis;
PUBLISHED: 2018, SOURCE: SCIENTIFIC REPORTS, VOLUME: 8
INDEXED IN: WOS
WOS10
TITLE: Bayesian inference of set-point viral load transmission models
AUTHORS: Libin, P; Hernalsteen, L; Theys, K; Gomes, P; Abecasis, A; Nowé, A;
PUBLISHED: 2018, SOURCE: 30th Benelux Conference on Artificial Intelligence, BNAIC 2018 in Belgian/Netherlands Artificial Intelligence Conference
AUTHORS: Libin, P; Hernalsteen, L; Theys, K; Gomes, P; Abecasis, A; Nowé, A;
PUBLISHED: 2018, SOURCE: 30th Benelux Conference on Artificial Intelligence, BNAIC 2018 in Belgian/Netherlands Artificial Intelligence Conference
INDEXED IN: Scopus
Scopus