Carlos Daniel Moutinho Machado
AuthID: R-000-QBJ
1
TITLE: Genome-scale metabolic modeling ofRuminiclostridium cellulolyticum: a microbial cell factory for valorization of lignocellulosic biomass
AUTHORS: Idun Burgos; Ove Øyås; Stéphanie Perret; Henri-Pierre Fierobe; Daniel Machado;
PUBLISHED: 2025
AUTHORS: Idun Burgos; Ove Øyås; Stéphanie Perret; Henri-Pierre Fierobe; Daniel Machado;
PUBLISHED: 2025
2
TITLE: Genome-scale metabolic modeling of
Ruminiclostridium cellulolyticum
: a microbial cell factory for valorization of lignocellulosic biomass
AUTHORS: Idun Burgos; Ove Øyås; Stéphanie Perret; Henri-Pierre Fierobe; Daniel Machado;
PUBLISHED: 2025, SOURCE: mSystems
AUTHORS: Idun Burgos; Ove Øyås; Stéphanie Perret; Henri-Pierre Fierobe; Daniel Machado;
PUBLISHED: 2025, SOURCE: mSystems
3
TITLE: A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities
AUTHORS: Daniel Machado;
PUBLISHED: 2024, SOURCE: mSystems, VOLUME: 9, ISSUE: 2
AUTHORS: Daniel Machado;
PUBLISHED: 2024, SOURCE: mSystems, VOLUME: 9, ISSUE: 2
4
TITLE: A benchmark of optimization solvers for genome-scale metabolic modeling
AUTHORS: Daniel Machado;
PUBLISHED: 2023
AUTHORS: Daniel Machado;
PUBLISHED: 2023
5
TITLE: Microbial interactions shape cheese flavour formation
AUTHORS: Chrats Melkonian; Francisco Zorrilla; Inge Kjærbølling; Sonja Blasche; Daniel Machado; Mette Junge; Kim Ib Sørensen; Lene Tranberg Andersen; Kiran R Patil; Ahmad A Zeidan;
PUBLISHED: 2023, SOURCE: Nature Communications, VOLUME: 14, ISSUE: 1
AUTHORS: Chrats Melkonian; Francisco Zorrilla; Inge Kjærbølling; Sonja Blasche; Daniel Machado; Mette Junge; Kim Ib Sørensen; Lene Tranberg Andersen; Kiran R Patil; Ahmad A Zeidan;
PUBLISHED: 2023, SOURCE: Nature Communications, VOLUME: 14, ISSUE: 1
6
TITLE: Is Web Browsing Secure? Assessment from an End-User Perspective
AUTHORS: Ramires, Moises; Machado, Carlos; Gomes, Antonio; Carvalho, Paulo ; Lima, Solange Rito;
PUBLISHED: 2022, SOURCE: World Conference on Information Systems and Technologies (WorldCIST) in INFORMATION SYSTEMS AND TECHNOLOGIES, WORLDCIST 2022, VOL 1, VOLUME: 468
AUTHORS: Ramires, Moises; Machado, Carlos; Gomes, Antonio; Carvalho, Paulo ; Lima, Solange Rito;
PUBLISHED: 2022, SOURCE: World Conference on Information Systems and Technologies (WorldCIST) in INFORMATION SYSTEMS AND TECHNOLOGIES, WORLDCIST 2022, VOL 1, VOLUME: 468
INDEXED IN: 
Scopus 
WOS
Scopus WOS7
TITLE: Metabolic memory underlying minimal residual disease in breast cancer
AUTHORS: Ksenija Radic Shechter; Eleni Kafkia; Katharina Zirngibl; Sylwia Gawrzak; Ashna Alladin; Daniel Machado; Christian Lüchtenborg; Daniel C Sévin; Britta Brügger; Kiran R Patil; Martin Jechlinger;
PUBLISHED: 2021, SOURCE: Molecular Systems Biology, VOLUME: 17, ISSUE: 10
AUTHORS: Ksenija Radic Shechter; Eleni Kafkia; Katharina Zirngibl; Sylwia Gawrzak; Ashna Alladin; Daniel Machado; Christian Lüchtenborg; Daniel C Sévin; Britta Brügger; Kiran R Patil; Martin Jechlinger;
PUBLISHED: 2021, SOURCE: Molecular Systems Biology, VOLUME: 17, ISSUE: 10
8
TITLE: Benchmarking kinetic models ofEscherichia colimetabolism
AUTHORS: Denis Shepelin; Daniel Machado; Lars K Nielsen; Markus J Herrgård;
PUBLISHED: 2020
AUTHORS: Denis Shepelin; Daniel Machado; Lars K Nielsen; Markus J Herrgård;
PUBLISHED: 2020
9
TITLE: Oncogenic memory underlying minimal residual disease in breast cancer
AUTHORS: Ksenija Radic Shechter; Eleni Kafkia; Katharina Zirngibl; Sylwia Gawrzak; Ashna Alladin; Daniel Machado; Christian Lüchtenborg; Daniel C Sévin; Britta Brügger; Kiran R Patil; Martin Jechlinger;
PUBLISHED: 2020
AUTHORS: Ksenija Radic Shechter; Eleni Kafkia; Katharina Zirngibl; Sylwia Gawrzak; Ashna Alladin; Daniel Machado; Christian Lüchtenborg; Daniel C Sévin; Britta Brügger; Kiran R Patil; Martin Jechlinger;
PUBLISHED: 2020
10
TITLE: Polarization of microbial communities between competitive and cooperative metabolism
AUTHORS: Daniel Machado; Oleksandr M Maistrenko; Sergej Andrejev; Yongkyu Kim; Peer Bork; Kaustubh R Patil; Kiran R Patil;
PUBLISHED: 2020
AUTHORS: Daniel Machado; Oleksandr M Maistrenko; Sergej Andrejev; Yongkyu Kim; Peer Bork; Kaustubh R Patil; Kiran R Patil;
PUBLISHED: 2020
