Carlos Daniel Moutinho Machado
AuthID: R-000-QBJ
11
TITLE: Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations Full Text
AUTHORS: Kang Kang; Basti Bergdahl; Daniel Machado; Laura Dato; Ting Li Han; Jun Li; Silas Villas Boas; Markus J Herrgard; Jochen Forster; Gianni Panagiotou;
PUBLISHED: 2019, SOURCE: GIGASCIENCE, VOLUME: 8, ISSUE: 4
AUTHORS: Kang Kang; Basti Bergdahl; Daniel Machado; Laura Dato; Ting Li Han; Jun Li; Silas Villas Boas; Markus J Herrgard; Jochen Forster; Gianni Panagiotou;
PUBLISHED: 2019, SOURCE: GIGASCIENCE, VOLUME: 8, ISSUE: 4
INDEXED IN: 
Scopus 
WOS
Scopus WOS12
TITLE: Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
AUTHORS: Daniel Machado; Sergej Andrejev; Melanie Tramontano; Kiran Raosaheb Patil;
PUBLISHED: 2018
AUTHORS: Daniel Machado; Sergej Andrejev; Melanie Tramontano; Kiran Raosaheb Patil;
PUBLISHED: 2018
13
TITLE: Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells
AUTHORS: Gonçalves, Emanuel; Marco Sciacovelli; Ana S H Costa; Timothy Isaac Johnson; Daniel Machado; Christian Frezza; Julio Saez-Rodriguez;
PUBLISHED: 2017
AUTHORS: Gonçalves, Emanuel; Marco Sciacovelli; Ana S H Costa; Timothy Isaac Johnson; Daniel Machado; Christian Frezza; Julio Saez-Rodriguez;
PUBLISHED: 2017
14
TITLE: Bacterial Vaginosis Biofilms: Challenges to Current Therapies and Emerging Solutions Full Text
AUTHORS: Daniela Machado; Joana Castro; Ana Palmeira de Oliveira; Jose Martinez de Oliveira; Nuno Cerca ;
PUBLISHED: 2016, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 6, ISSUE: JAN
AUTHORS: Daniela Machado; Joana Castro; Ana Palmeira de Oliveira; Jose Martinez de Oliveira; Nuno Cerca ;
PUBLISHED: 2016, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 6, ISSUE: JAN
15
TITLE: Current state and challenges for dynamic metabolic modeling Full Text
AUTHORS: Eleni Vasilakou; Daniel Machado; Axel Theorell; Isabel Rocha; Katharina Noeh; Marco Oldiges; Aljoscha A Wahl;
PUBLISHED: 2016, SOURCE: CURRENT OPINION IN MICROBIOLOGY, VOLUME: 33
AUTHORS: Eleni Vasilakou; Daniel Machado; Axel Theorell; Isabel Rocha; Katharina Noeh; Marco Oldiges; Aljoscha A Wahl;
PUBLISHED: 2016, SOURCE: CURRENT OPINION IN MICROBIOLOGY, VOLUME: 33
16
TITLE: Stoichiometric Representation of Gene-Protein-Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction Full Text
AUTHORS: Machado, D; Herrgard, MJ; Rocha, I;
PUBLISHED: 2016, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 12, ISSUE: 10
AUTHORS: Machado, D; Herrgard, MJ; Rocha, I;
PUBLISHED: 2016, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 12, ISSUE: 10
17
TITLE: Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes
AUTHORS: Monk, JM; Koza, A; Campodonico, MA; Machado, D; Seoane, JM; Palsson, BO; Herrgard, MJ; Feist, AM;
PUBLISHED: 2016, SOURCE: CELL SYSTEMS, VOLUME: 3, ISSUE: 3
AUTHORS: Monk, JM; Koza, A; Campodonico, MA; Machado, D; Seoane, JM; Palsson, BO; Herrgard, MJ; Feist, AM;
PUBLISHED: 2016, SOURCE: CELL SYSTEMS, VOLUME: 3, ISSUE: 3
18
TITLE: A Comparative Analysis of Dynamic Models of the Central Carbon Metabolism of Escherichia coli
AUTHORS: Lima, AP; Baixinho, V; Machado, D; Rocha, I;
PUBLISHED: 2016, SOURCE: 6th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE) in IFAC PAPERSONLINE, VOLUME: 49, ISSUE: 26
AUTHORS: Lima, AP; Baixinho, V; Machado, D; Rocha, I;
PUBLISHED: 2016, SOURCE: 6th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE) in IFAC PAPERSONLINE, VOLUME: 49, ISSUE: 26
19
TITLE: Optimization of culture conditions for Gardnerella vaginalis biofilm formation Full Text
AUTHORS: Daniela Machado; Ana Palmeira de Oliveira; Nuno Cerca ;
PUBLISHED: 2015, SOURCE: JOURNAL OF MICROBIOLOGICAL METHODS, VOLUME: 118
AUTHORS: Daniela Machado; Ana Palmeira de Oliveira; Nuno Cerca ;
PUBLISHED: 2015, SOURCE: JOURNAL OF MICROBIOLOGICAL METHODS, VOLUME: 118
20
TITLE: Genome-Scale Models
AUTHORS: Bergdahl, B; Sonnenschein, N; Machado, D; Herrgård, M; Förster, J;
PUBLISHED: 2015, SOURCE: Fundamental Bioengineering
AUTHORS: Bergdahl, B; Sonnenschein, N; Machado, D; Herrgård, M; Förster, J;
PUBLISHED: 2015, SOURCE: Fundamental Bioengineering
