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TITLE: Retrospective Spatio-Temporal Dynamics of Dengue Virus 1, 2 and 4 in Paraguay  Full Text
AUTHORS: Vazquez, Cynthia; Alcantara, Luiz Carlos Junior; Fonseca, Vagner; Lima, Mauricio; Xavier, Joilson; Adelino, Talita; Fritsch, Hegger; Castro, Emerson; de Oliveira, Carla; Schuab, Gabriel; Lima, Alex Ranieri Jeronimo; Villalba, Shirley; de la Fuente, Andrea Gomez; Rojas, Analia; Cantero, Cesar; Fleitas, Fatima; Aquino, Carolina; Ojeda, Andrea; Sequera, Guillermo; Torales, Juan; Barrios, Julio; Elias, Maria Carolina; Iani, Felipe C. M.; Ortega, Maria Jose; Gamarra, Maria Liz; Montoya, Romeo; Rodrigues, Evandra Strazza; Kashima, Simone; Sampaio, Sandra Coccuzzo; Coluchi, Norma; Leite, Juliana; Gresh, Lionel; Franco, Leticia; Lourenco, Jose; Rico, Jairo Mendez; de Filippis, Ana Maria Bispo; Giovanetti, Marta; ...More
PUBLISHED: 2023, SOURCE: VIRUSES-BASEL, VOLUME: 15, ISSUE: 6
INDEXED IN: Scopus WOS
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TITLE: Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil
AUTHORS: Giovanetti, Marta; Pinotti, Francesco; Zanluca, Camila; Fonseca, Vagner; Nakase, Taishi; Koishi, Andrea C.; Tscha, Marcel; Soares, Guilherme; Dorl, Gisiane Gruber; Marques, Antonio Ernesto M. L.; Sousa, Renato; Adelino, Talita Emile Ribeiro; Xavier, Joilson; de Oliveira, Carla; Patroca, Sandro; Guimaraes, Natalia Rocha; Fritsch, Hegger; Mares Guia, Maria Angelica; Levy, Flavia; Passos, Pedro Henrique; da Silva, Vinicius Leme; Pereira, Luiz Augusto; Mendonca, Ana Flavia; de Macedo, Isabel Luana; Ribeiro de Sousa, Davi Emanuel; Rodrigues de Toledo Costa, Gabriela; Botelho de Castro, Marcio; de Souza Andrade, Miguel; de Abreu, Filipe Vieira Santos; Campos, Fabricio Souza; Iani, Felipe Campos de Melo; Pereira, Maira Alves; Cavalcante, Karina Ribeiro Leite Jardim; de Freitas, Andre Ricardo Ribas; Campelo de Albuquerque, Carlos Frederico; Macario, Eduardo Marques; dos Anjos, Marlei Pickler Debiasi; Ramos, Rosane Campanher; Campos, Aline Alves Scarpellini; Pinter, Adriano; Chame, Marcia; Abdalla, Livia; Riediger, Irina Nastassja; Ribeiro, Servio Pontes; Bento, Ana I.; de Oliveira, Tulio; Freitas, Carla; Oliveira de Moura, Noely Fabiana; Fabri, Allison; dos Santos Rodrigues, Cintia Damasceno; Dos Santos, Carolina Cardoso; Barreto de Almeida, Marco Antonio; dos Santos, Edmilson; Cardoso, Jader; Augusto, Douglas Adriano; Krempser, Eduardo; Mucci, Luis Filipe; Gatti, Renata Rispoli; Cardoso, Sabrina Fernandes; Fuck, Joao Augusto Brancher; Lopes, Maria Goretti David; Belmonte, Ivana Lucia; Mayoral Pedroso da Silva, Gabriela; Soares, Maiane Regina Ferreira; de Castilhos, Marilia de Melo Santos; Silva, Joseana Cardoso; Bisetto Junior, Alceu; Pouzato, Emanuelle Gemin; Tanabe, Laurina Setsuko; Arita, Daniele Akemi; Matsuo, Ricardo; dos Santos Raymundo, Josiane; Silva, Paula Cristina Linder; Santana Araujo Ferreira Silva, Ana; Samila, Sandra; Carvalho, Glauco; Stabeli, Rodrigo; Navegantes, Wildo; Moreira, Luciano Andrade; Ferreira, Alvaro Gil A.; Pinheiro, Guilherme Garcia; Nunes, Bruno Tardelli Diniz; de Almeida Medeiros, Daniele Barbosa; Cruz, Ana Cecilia Ribeiro; Venancio da Cunha, Rivaldo; Van Voorhis, Wes; Bispo de Filippis, Ana Maria; Almiron, Maria; Holmes, Edward C.; Ramos, Daniel Garkauskas; Romano, Alessandro; Lourenco, Jose; Alcantara, Luiz Carlos Junior; Duarte dos Santos, Claudia Nunes; ...More
PUBLISHED: 2023, SOURCE: SCIENCE ADVANCES, VOLUME: 9, ISSUE: 35
INDEXED IN: WOS
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TITLE: Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic
AUTHORS: Giovanetti, Marta; Fonseca, Vagner; Wilkinson, Eduan; Tegally, Houriiyah; San, Emmanuel James; Althaus, Christian L.; Xavier, Joilson; Slavov, Svetoslav Nanev; Viala, Vincent Louis; Jeronimo Lima, Alex Ranieri; Ribeiro, Gabriela; Souza Neto, Jayme A.; Fukumasu, Heidge; Coutinho, Luiz Lehmann; da Cunha, Rivaldo Venancio; Freitas, Carla; e Melo, Carlos F. Campelo de A.; de Araujo, Wildo Navegantes; Do Carmo Said, Rodrigo Fabiano; Almiron, Maria; de Oliveira, Tulio; Sampaio, Sandra Coccuzzo; Elias, Maria Carolina; Covas, Dimas Tadeu; Holmes, Edward C.; Lourenco, Jose; Kashima, Simone; Junior de Alcantara, Luiz Carlos; ...More
PUBLISHED: 2022, SOURCE: VIRUS EVOLUTION, VOLUME: 8, ISSUE: 1
INDEXED IN: Scopus WOS
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TITLE: SARS-CoV-2 epidemic in Brazil: how the displacement of variants has driven distinct epidemic waves  Full Text
AUTHORS: Alcantara, Luiz Carlos Junior; Nogueira, Elisson; Shuab, Gabriel; Tosta, Stephane; Fristch, Hegger; Pimentel, Victor; Souza Neto, Jayme A.; Coutinho, Luiz Lehmann; Fukumasu, Heidge; Sampaio, Sandra Coccuzzo; Elias, Maria Carolina; Kashima, Simone; Slavov, Svetoslav Nanev; Ciccozzi, Massimo; Cella, Eleonora; Lourenco, Jose; Fonseca, Vagner; Giovanetti, Marta;
PUBLISHED: 2022, SOURCE: VIRUS RESEARCH, VOLUME: 315
INDEXED IN: Scopus WOS
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TITLE: Dynamics and Determinants of SARS-CoV-2 RT-PCR Testing on Symptomatic Individuals Attending Healthcare Centers during 2020 in Bahia, Brazil  Full Text
AUTHORS: Pereira, Felicidade Mota; Salomao de Araujo, Aline; Catarina Martins Reis, Ana; Santos da Hora, Anadilton; Pinotti, Francesco; Paton, Robert S.; Vilas Boas Figueiredo, Camylla; Lopes Damasceno, Caroline; Carlos dos Santos, Daiana; Souza de Santana, Daniele; Freitas Sales, Danielle; Ariana Andrade Brandao, Evelyn; da Silva Batista, Everton; Campos de Sousa, Fulvia Soares; Santana Menezes, Gabriela; Silveira dos Santos, Jackeline; Gomes Lima, Jaqueline; Tadeu Brito, Jean; Dandara dos Santos, Lenisa; Reboredo, Luciana; Santana Santos, Maiara; Kelly Astete Gomez, Marcela; Freitas da Cruz, Marcia; Rosa Ampuero, Mariana; Guerra Lemos da Silva, Mariele; S. da Paixao Melo, Mariza; Ferreira da Silva, Marta; de Jesus Goncalves dos Santos, Nadja; de Souza Pessoa, Nubia; Silva de Araujo, Ramile; de Macedo Godim, Taiane; Fraga de Oliveira Tosta, Stephane; Brandao Nardy, Vanessa; Cristina Faria, Elaine; Frederico de Carvalho Dominguez Souza, Breno; Lais Almeida dos Santos, Jessica; Wikramaratna, Paul; Giovanetti, Marta; Alcantara, Luiz Carlos Junior; Lourenco, Jose; Silva de Mello, Arabela Leal; ...More
PUBLISHED: 2022, SOURCE: VIRUSES-BASEL, VOLUME: 14, ISSUE: 7
INDEXED IN: Scopus WOS
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TITLE: Genome Detective: an automated system for virus identification from high-throughput sequencing data  Full Text
AUTHORS: Michael Vilsker; Yumna Moosa; Sam Nooij; Vagner Fonseca; Yoika Ghysens; Korneel Dumon; Raf Pauwels; Luiz Carlos Alcantara; Ewout Vanden Eynden; Anne Mieke Vandamme; Koen Deforche; Tulio de Oliveira;
PUBLISHED: 2019, SOURCE: BIOINFORMATICS, VOLUME: 35, ISSUE: 5
INDEXED IN: Scopus WOS
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TITLE: A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes  Full Text
AUTHORS: Vagner Fonseca; Pieter J K Libin; Kristof Theys; Nuno R Faria; Marcio R T Nunes; Maria I Restovic; Murilo Freire; Marta Giovanetti; Lize Cuypers; Ann Nowe; Ana Abecasis; Koen Deforche; Gilberto A Santiago; Isadora C de Siqueira; Emmanuel J San; Kaliane C B Machado; Vasco Azevedo; Ana Maria Bispo de Filippis; Rivaldo Venancio da Cunha; Oliver G Pybus; Anne Mieke Vandamme; Luiz C J Alcantara; Tulio de Oliveira; ...More
PUBLISHED: 2019, SOURCE: PLOS NEGLECTED TROPICAL DISEASES, VOLUME: 13, ISSUE: 5
INDEXED IN: Scopus WOS
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TITLE: The LASP HTLV-1 automated subtyping tool (http://lasp.cpqgm.fiocruz.br/virus-genotype/html/subtypinghtlv.html)
AUTHORS: Luiz Alcantara; Sonia Van Dooren; Koen Deforche; Andrew Rambaut; Sharon Cassol; Bernardo Galvao Castro; Anne Mieke Vandamme; Tulio de Oliveira;
PUBLISHED: 2007, SOURCE: 13th International Conference on Human Retrovirology - HTLV and Related Viruses in AIDS RESEARCH AND HUMAN RETROVIRUSES, VOLUME: 23, ISSUE: 4
INDEXED IN: WOS
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TITLE: Globin Haplotypes of Human T-Cell Lymphotropic Virus Type I–Infected Individuals in Salvador, Bahia, Brazil, Suggest a Post-Columbian African Origin of This Virus
AUTHORS: Luiz Carlos Alcantara,; Sonia Van Dooren; Marilda Souza Gonçalves; Simone Kashima; Maria Cristina Ramos Costa; Fred Luciano Neves Santos; Achilea Lisboa Bittencourt; Inês Dourado; Antonio Andrade Filho; Dimas Tadeu Covas; Anne-Mieke Vandamme; Bernardo Galvão-Castro;
PUBLISHED: 2003, SOURCE: JAIDS Journal of Acquired Immune Deficiency Syndromes, VOLUME: 33, ISSUE: 4
INDEXED IN: CrossRef