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TITLE: Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions
AUTHORS: Rich, Shannan N.; Richards, Veronica; Mavian, Carla; Magalis, Brittany Rife; Grubaugh, Nathan; Rasmussen, Sonja A.; Dellicour, Simon; Vrancken, Bram; Carrington, Christine; Fisk Hoffman, Rebecca; Danso Odei, Demi; Chacreton, Daniel; Shapiro, Jerne; Seraphin, Marie Nancy; Hepp, Crystal; Black, Allison; Dennis, Ann; Trovao, Nidia Sequeira; Vandamme, Anne Mieke; Rasmussen, Angela; Lauzardo, Michael; Dean, Natalie; Salemi, Marco; Prosperi, Mattia; ...More
PUBLISHED: 2023, SOURCE: JMIR FORMATIVE RESEARCH, VOLUME: 7
INDEXED IN: Scopus WOS
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TITLE: Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts
AUTHORS: Guarnieri, Joseph W.; Dybas, Joseph M.; Fazelinia, Hossein; Kim, Man S.; Frere, Justin; Zhang, Yuanchao; Soto Albrecht, Yentli; Murdock, Deborah G.; Angelin, Alessia; Singh, Larry N.; Weiss, Scott L.; Best, Sonja M.; Lott, Marie T.; Zhang, Shiping; Cope, Henry; Zaksas, Victoria; Saravia Butler, Amanda; Meydan, Cem; Foox, Jonathan; Mozsary, Christopher; Bram, Yaron; Kidane, Yared; Priebe, Waldemar; Emmett, Mark R.; Meller, Robert; Demharter, Sam; Stentoft Hansen, Valdemar; Salvatore, Marco; Galeano, Diego; Enguita, Francisco J. ; Grabham, Peter; Trovao, Nidia S.; Singh, Urminder; Haltom, Jeffrey; Heise, Mark T.; Moorman, Nathaniel J.; Baxter, Victoria K.; Madden, Emily A.; Taft Benz, Sharon A.; Anderson, Elizabeth J.; Sanders, Wes A.; Dickmander, Rebekah J.; Baylin, Stephen B.; Wurtele, Eve Syrkin; Moraes Vieira, Pedro M.; Taylor, Deanne; Mason, Christopher E.; Schisler, Jonathan C.; Schwartz, Robert E.; Beheshti, Afshin; Wallace, Douglas C.; ...More
PUBLISHED: 2023, SOURCE: SCIENCE TRANSLATIONAL MEDICINE, VOLUME: 15, ISSUE: 708
INDEXED IN: Scopus WOS
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TITLE: A comprehensive SARS-CoV-2 and COVID-19 review, Part 2: host extracellular to systemic effects of SARS-CoV-2 infection  Full Text
AUTHORS: Narayanan, S. Anand; Jamison, David A.; Guarnieri, Joseph W.; Zaksas, Victoria; Topper, Michael; Koutnik, Andrew P.; Park, Jiwoon; Clark, Kevin B.; Enguita, Francisco J. ; Leitao, Ana Lucia; Das, Saswati; Moraes Vieira, Pedro M.; Galeano, Diego; Mason, Christopher E.; Trovao, Nidia S.; Schwartz, Robert E.; Schisler, Jonathan C.; Coelho dos Reis, Jordana G. A.; Wurtele, Eve Syrkin; Beheshti, Afshin;
PUBLISHED: 2023, SOURCE: EUROPEAN JOURNAL OF HUMAN GENETICS
INDEXED IN: Scopus WOS
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TITLE: Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1
AUTHORS: Trovao, Nidia Sequeira; Thijssen, Marijn; Vrancken, Bram; Pineda Pena, Andrea Clemencia; Mina, Thomas; Amini Bavil Olyaee, Samad; Lemey, Philippe; Baele, Guy; Pourkarim, Mahmoud Reza;
PUBLISHED: 2022, SOURCE: VIRUS EVOLUTION, VOLUME: 8, ISSUE: 1
INDEXED IN: WOS
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TITLE: Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing  Full Text
AUTHORS: Bram Vrancken; Nidia Sequeira Trovao; Guy Baele; Eric van Wijngaerden; Anne Mieke Vandamme; Kristel van Laethem; Philippe Lemey;
PUBLISHED: 2016, SOURCE: VIRUSES-BASEL, VOLUME: 8, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef