Biomolecular Simulation (BioSIM)
Center for Health Technology and Services Research (CINTESIS) :: Clinical and Translational Research
AuthID: I-000-B6D
Publications Actions
Publications at Authenticus Institutional Profile
An Authenticus institution (group) is an organization which consists of a set of researchers (institutional/group team). The set of researchers depends on the organizational structure of the institution per year and can be set at the institution profile, under ‘Researchers’ interface. Based on the institutional team we produce listings of publications, statistics and institutional reports.
Publications displayed at an Authenticus institutional profile depend on two parameters:
- Researchers team associated with the institution per year.
- Publications source type.
We define 3 types of publication sources:
- Validated by team members - includes all publications validated by team members. Requires the definition of the institutional team.
- All published by team members - includes all publications validated by the institution team members plus all not-validated (only identified) publications. Requires the definition of the institutional team.
- Affiliation Based - includes publications that have the institution/group in the publication affiliation. Does not require institutional team, but at the same time does not guarantee that all publications will be listed.
External
Internal
No data about last update.
Rules:
This actions updates publications citations of every team member.
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
Only validated by team members publications are included.
Only the current year team is included in this action.>
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a month!
No data about last update.
Rules:
This actions updates all pre print publications of the group/institution.
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Only validated by current year team members publications are included.
The action is executed in the background, thus the results are NOT immediate.
This actions can be executed only once a day!
Publications Count: 432
8 Team MembersFilters -> Year: 2026
181
TITLE: The Catalytic Mechanism of the Pyridoxal-5 '-phosphate-Dependent Enzyme, Histidine Decarboxylase: A Computational Study
AUTHORS: Fernandes, HS ; Ramos, MJ ; Cerqueira, NMFSA ;
PUBLISHED: 2017, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 23, ISSUE: 38, PAGES: 9162-9173
AUTHORS: Fernandes, HS ; Ramos, MJ ; Cerqueira, NMFSA ;
PUBLISHED: 2017, SOURCE: CHEMISTRY-A EUROPEAN JOURNAL, VOLUME: 23, ISSUE: 38, PAGES: 9162-9173
182
TITLE: The mechanism of the Ser-(cis)Ser-Lys catalytic triad of peptide amidases Full Text
AUTHORS: Cerqueira, NMFSA ; Moorthy, H; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 19, ISSUE: 19, PAGES: 12343-12354
AUTHORS: Cerqueira, NMFSA ; Moorthy, H; Fernandes, PA ; Ramos, MJ ;
PUBLISHED: 2017, SOURCE: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, VOLUME: 19, ISSUE: 19, PAGES: 12343-12354
183
TITLE: Total Facial Discrimination of 1,3-Dipolar Cycloadditions in a D-Erythrose 1,3-Dioxane Template: Computational Studies of a Concerted Mechanism
AUTHORS: Sousa, CEA; Ribeiro, AMP; Fortes, AG; Cerqueira, NMFSA ; Alves, MJ;
PUBLISHED: 2017, SOURCE: JOURNAL OF ORGANIC CHEMISTRY, VOLUME: 82, ISSUE: 2, PAGES: 982-991
AUTHORS: Sousa, CEA; Ribeiro, AMP; Fortes, AG; Cerqueira, NMFSA ; Alves, MJ;
PUBLISHED: 2017, SOURCE: JOURNAL OF ORGANIC CHEMISTRY, VOLUME: 82, ISSUE: 2, PAGES: 982-991
184
TITLE: A common variant within the HNF1B gene is associated with overall survival of multiple myeloma patients: Results from the IMMEnSE consortium and meta-analysis
AUTHORS: Rafael Rios Tamayo; Carmen B Belen Lupianez; Daniele Campa; Thomas Hielscher; Niels Weinhold; Joaquin Martinez Lopez; Andres Jerez; Stefano Landi; Krzysztof Jamroziak; Charles Dumontet; Marzena Watek; Fabienne Lesueur; Rui Manuel Reis; Herlander Marques ; Artur Jurczyszyn; Ulla Vogel; Gabriele Buda; Ramon Garcia Sanz; Enrico Orciuolo; Mario Petrini; ...More
PUBLISHED: 2016, SOURCE: ONCOTARGET, VOLUME: 7, ISSUE: 37, PAGES: 59029-59048
AUTHORS: Rafael Rios Tamayo; Carmen B Belen Lupianez; Daniele Campa; Thomas Hielscher; Niels Weinhold; Joaquin Martinez Lopez; Andres Jerez; Stefano Landi; Krzysztof Jamroziak; Charles Dumontet; Marzena Watek; Fabienne Lesueur; Rui Manuel Reis; Herlander Marques ; Artur Jurczyszyn; Ulla Vogel; Gabriele Buda; Ramon Garcia Sanz; Enrico Orciuolo; Mario Petrini; ...More
PUBLISHED: 2016, SOURCE: ONCOTARGET, VOLUME: 7, ISSUE: 37, PAGES: 59029-59048
185
TITLE: A Flow Cytometric and Computational Approaches to Carbapenems Affinity to the Different Types of Carbapenemases Full Text
AUTHORS: Cidalia Pina Vaz ; Ana P Silva ; Isabel Faria-Ramos; Rita Teixeira Santos ; Daniel Moura; Tatiana F Vieira; Sérgio F. Sousa ; Sofia Costa de Oliveira ; Rafael Canton; Acacio G Rodrigues ;
PUBLISHED: 2016, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 7, ISSUE: AUG
AUTHORS: Cidalia Pina Vaz ; Ana P Silva ; Isabel Faria-Ramos; Rita Teixeira Santos ; Daniel Moura; Tatiana F Vieira; Sérgio F. Sousa ; Sofia Costa de Oliveira ; Rafael Canton; Acacio G Rodrigues ;
PUBLISHED: 2016, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 7, ISSUE: AUG
186
TITLE: Absence of microsatellite instability and BRAF (V600E) mutation in testicular germ cell tumors Full Text
AUTHORS: Carcano, FM; Lengert, AH; Vidal, DO; Scapulatempo Neto, CS; Queiroz, L; Marques, H ; Baltazar, F ; Berardinelli, GN; Martinelli, CMS; da Silva, ECA; Reis, RM ; Lopes, LF;
PUBLISHED: 2016, SOURCE: ANDROLOGY, VOLUME: 4, ISSUE: 5, PAGES: 866-872
AUTHORS: Carcano, FM; Lengert, AH; Vidal, DO; Scapulatempo Neto, CS; Queiroz, L; Marques, H ; Baltazar, F ; Berardinelli, GN; Martinelli, CMS; da Silva, ECA; Reis, RM ; Lopes, LF;
PUBLISHED: 2016, SOURCE: ANDROLOGY, VOLUME: 4, ISSUE: 5, PAGES: 866-872
187
TITLE: Abstract A31: Integrative differential allelic expression analysis efficiently reveals the biology underlying risk to breast cancer
AUTHORS: Joana Xavier; Roslin Russell; Bernardo P Almeida; Nordiana Rosli; Catia Rocha; Shamith Samarajiwa; Suet-Feung Chin; Carlos Caldas; Bruce AJ Ponder; Ana-Teresa Maia ;
PUBLISHED: 2016, SOURCE: Genomics - Sporadic and Hereditary
AUTHORS: Joana Xavier; Roslin Russell; Bernardo P Almeida; Nordiana Rosli; Catia Rocha; Shamith Samarajiwa; Suet-Feung Chin; Carlos Caldas; Bruce AJ Ponder; Ana-Teresa Maia ;
PUBLISHED: 2016, SOURCE: Genomics - Sporadic and Hereditary
188
TITLE: Binding mode of conformations and structure-based pharmacophore development for farnesyltransferase inhibitors Full Text
AUTHORS: Hari Narayana H N Moorthy; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: MEDICINAL CHEMISTRY RESEARCH, VOLUME: 25, ISSUE: 7, PAGES: 1340-1357
AUTHORS: Hari Narayana H N Moorthy; Sérgio F. Sousa ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: MEDICINAL CHEMISTRY RESEARCH, VOLUME: 25, ISSUE: 7, PAGES: 1340-1357
189
TITLE: Cholesterol Biosynthesis: A Mechanistic Overview Full Text
AUTHORS: Cerqueira, NMFSA ; Oliveira, EF; Gesto, DS; Santos Martins, D; cristina freire ; Moorthy, HN; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: BIOCHEMISTRY, VOLUME: 55, ISSUE: 39, PAGES: 5483-5506
AUTHORS: Cerqueira, NMFSA ; Oliveira, EF; Gesto, DS; Santos Martins, D; cristina freire ; Moorthy, HN; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: BIOCHEMISTRY, VOLUME: 55, ISSUE: 39, PAGES: 5483-5506
190
TITLE: HMG-CoA Reductase inhibitors: an updated review of patents of novel compounds and formulations (2011-2015)
AUTHORS: Oliveira, EF; Santos Martins, D; Ribeiro, AM ; Bras, NF ; Cerqueira, NS ; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: EXPERT OPINION ON THERAPEUTIC PATENTS, VOLUME: 26, ISSUE: 11, PAGES: 1257-1272
AUTHORS: Oliveira, EF; Santos Martins, D; Ribeiro, AM ; Bras, NF ; Cerqueira, NS ; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: EXPERT OPINION ON THERAPEUTIC PATENTS, VOLUME: 26, ISSUE: 11, PAGES: 1257-1272
191
TITLE: Hotspot TERT promoter mutations are rare events in testicular germ cell tumors
AUTHORS: Flavio Mavignier Carcano; Daniel Onofre Vidal; Andre van Helvoort Lengert; Cristovam Scapulatempo Neto; Luisa Queiroz; Herlander Marques ; Fatima Baltazar ; Camila Maria D da Silva Martinelli; Paula Soares ; Eduardo Caetano A Albino da Silva; Luiz Fernando Lopes; Rui Manuel Reis;
PUBLISHED: 2016, SOURCE: TUMOR BIOLOGY, VOLUME: 37, ISSUE: 4, PAGES: 4901-4907
AUTHORS: Flavio Mavignier Carcano; Daniel Onofre Vidal; Andre van Helvoort Lengert; Cristovam Scapulatempo Neto; Luisa Queiroz; Herlander Marques ; Fatima Baltazar ; Camila Maria D da Silva Martinelli; Paula Soares ; Eduardo Caetano A Albino da Silva; Luiz Fernando Lopes; Rui Manuel Reis;
PUBLISHED: 2016, SOURCE: TUMOR BIOLOGY, VOLUME: 37, ISSUE: 4, PAGES: 4901-4907
192
TITLE: Improving the Biodesulfurization of Crude Oil and Derivatives: A QM/MM Investigation of the Catalytic Mechanism of NADH-FMN Oxidoreductase (DszD)
AUTHORS: Sérgio F. Sousa ; Joana F M Sousa; Ana C C Barbosa; Cleide E Ferreira; Neves, Rui P. P. ; Antonio J M Ribeiro ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2016, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY A, VOLUME: 120, ISSUE: 27, PAGES: 5300-5306
AUTHORS: Sérgio F. Sousa ; Joana F M Sousa; Ana C C Barbosa; Cleide E Ferreira; Neves, Rui P. P. ; Antonio J M Ribeiro ; Pedro A Fernandes ; Maria Joao Ramos ;
PUBLISHED: 2016, SOURCE: JOURNAL OF PHYSICAL CHEMISTRY A, VOLUME: 120, ISSUE: 27, PAGES: 5300-5306
193
TITLE: Methodology for single nucleotide polymorphism selection in promoter regions for clinical use. An example of its applicability Full Text
AUTHORS: Marques, H ; Freitas, J; Rui Medeiros ; Longatto, A;
PUBLISHED: 2016, SOURCE: INTERNATIONAL JOURNAL OF MOLECULAR EPIDEMIOLOGY AND GENETICS, VOLUME: 7, ISSUE: 3, PAGES: 126-+
AUTHORS: Marques, H ; Freitas, J; Rui Medeiros ; Longatto, A;
PUBLISHED: 2016, SOURCE: INTERNATIONAL JOURNAL OF MOLECULAR EPIDEMIOLOGY AND GENETICS, VOLUME: 7, ISSUE: 3, PAGES: 126-+
INDEXED IN: 
Scopus 
WOS 
Handle
Scopus WOS Handle194
TITLE: Molecular dynamic simulations and structure-based pharmacophore development for farnesyltransferase inhibitors discovery Full Text
AUTHORS: Moorthy, NSHN; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, VOLUME: 31, ISSUE: 6, PAGES: 1428-1442
AUTHORS: Moorthy, NSHN; Sérgio F. Sousa ; Ramos, MJ ; Fernandes, PA ;
PUBLISHED: 2016, SOURCE: JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, VOLUME: 31, ISSUE: 6, PAGES: 1428-1442
195
TITLE: PIK3CA mutant allele differential expression (MADE) associates with breast cancer clinical features Full Text
AUTHORS: Xavier, J; Almeida, B; Sun, C; Silva, J; Marreiros, A; Eldridge, M; Bernards, R; Carlos, C; S.F Chin; A.T Maia ;
PUBLISHED: 2016, SOURCE: European Journal of Cancer, VOLUME: 61
AUTHORS: Xavier, J; Almeida, B; Sun, C; Silva, J; Marreiros, A; Eldridge, M; Bernards, R; Carlos, C; S.F Chin; A.T Maia ;
PUBLISHED: 2016, SOURCE: European Journal of Cancer, VOLUME: 61
INDEXED IN: 
CrossRef
CrossRef196
TITLE: QM/MM study of the mechanism of reduction of 3-hydroxy-3-methylglutaryl coenzyme A catalyzed by human HMG-CoA reductase
AUTHORS: Eduardo F Oliveira; Nuno M F S A Cerqueira ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: CATALYSIS SCIENCE & TECHNOLOGY, VOLUME: 6, ISSUE: 19, PAGES: 7172-7185
AUTHORS: Eduardo F Oliveira; Nuno M F S A Cerqueira ; Maria J Ramos ; Pedro A Fernandes ;
PUBLISHED: 2016, SOURCE: CATALYSIS SCIENCE & TECHNOLOGY, VOLUME: 6, ISSUE: 19, PAGES: 7172-7185
197
TITLE: RAPAMYCIN INDUCED CHANGES IN LYMPHOCYTES SUBSETS STUDIED BY FLOW CYTOMETRY IN KIDNEY TRANSPLANT PATIENTS
AUTHORS: Maria Paula D P Xavier; Maria Conceicao Magalhaes; Susana Sampaio Norton ; Tiago Guimaraes ; Jose Gerardo Oliveira ;
PUBLISHED: 2016, SOURCE: HLA, VOLUME: 87, ISSUE: 4, PAGES: 205-205
AUTHORS: Maria Paula D P Xavier; Maria Conceicao Magalhaes; Susana Sampaio Norton ; Tiago Guimaraes ; Jose Gerardo Oliveira ;
PUBLISHED: 2016, SOURCE: HLA, VOLUME: 87, ISSUE: 4, PAGES: 205-205
INDEXED IN: WOS
WOS198
TITLE: Risk factors for mortality in end-stage kidney disease patients under online-hemodiafiltration: three-year follow-up study Full Text
AUTHORS: Pedro de Sousa Martins; Alexandra Moura; Jose Madureira; Pablo Alija; Jose Gerardo Oliveira ; Martin Lopez; Madalena Filgueiras; Leonilde Amado; Maria Sameiro Faria; Vasco Miranda; Edgar Mesquita; Laetitia Teixeira ; Veronica Poveda; Luisa Lobato; Alice Santos-Silva ; Elisio Costa ;
PUBLISHED: 2016, SOURCE: BIOMARKERS, VOLUME: 21, ISSUE: 6, PAGES: 544-550
AUTHORS: Pedro de Sousa Martins; Alexandra Moura; Jose Madureira; Pablo Alija; Jose Gerardo Oliveira ; Martin Lopez; Madalena Filgueiras; Leonilde Amado; Maria Sameiro Faria; Vasco Miranda; Edgar Mesquita; Laetitia Teixeira ; Veronica Poveda; Luisa Lobato; Alice Santos-Silva ; Elisio Costa ;
PUBLISHED: 2016, SOURCE: BIOMARKERS, VOLUME: 21, ISSUE: 6, PAGES: 544-550
199
TITLE: Significance of glycolytic metabolism-related protein expression in colorectal cancer, lymph node and hepatic metastasis Full Text
AUTHORS: Martins, SF; Amorim, R; Viana Pereira, M; Pinheiro, C; Costa, RFA; Silva, P; Couto, C; Alves, S; Fernandes, S; Vilaca, S; Falcao, J; Marques, H ; Pardal, F; Rodrigues, M; Preto, A ; Reis, RM ; Longatto, A ; Baltazar, F ;
PUBLISHED: 2016, SOURCE: BMC CANCER, VOLUME: 16, ISSUE: 1
AUTHORS: Martins, SF; Amorim, R; Viana Pereira, M; Pinheiro, C; Costa, RFA; Silva, P; Couto, C; Alves, S; Fernandes, S; Vilaca, S; Falcao, J; Marques, H ; Pardal, F; Rodrigues, M; Preto, A ; Reis, RM ; Longatto, A ; Baltazar, F ;
PUBLISHED: 2016, SOURCE: BMC CANCER, VOLUME: 16, ISSUE: 1
200
TITLE: Studying Haloanisoles Interaction with Olfactory Receptors
AUTHORS: Teixeira, CSS; Ferreira, ACS ; Cerqueira, NMFSA ;
PUBLISHED: 2016, SOURCE: ACS CHEMICAL NEUROSCIENCE, VOLUME: 7, ISSUE: 7, PAGES: 870-885
AUTHORS: Teixeira, CSS; Ferreira, ACS ; Cerqueira, NMFSA ;
PUBLISHED: 2016, SOURCE: ACS CHEMICAL NEUROSCIENCE, VOLUME: 7, ISSUE: 7, PAGES: 870-885
