31
TITLE: A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation
AUTHORS: Cruz, F; Faria, JP; Rocha, M ; Rocha, I; Dias, O ;
PUBLISHED: 2020, SOURCE: BIOCHEMICAL SOCIETY TRANSACTIONS, VOLUME: 48, ISSUE: 5
INDEXED IN: Scopus WOS CrossRef: 16
32
TITLE: A Tailspike with Exopolysaccharide Depolymerase Activity from a New Providencia stuartii Phage Makes Multidrug-Resistant Bacteria Susceptible to Serum-Mediated Killing
AUTHORS: Oliveira, H; Pinto, G; Mendes, B; Dias, O ; Hendrix, H; Akturk, E; Noben, JP; Gawor, J; Lobocka, M; Lavigne, R; Azeredo, J;
PUBLISHED: 2020, SOURCE: APPLIED AND ENVIRONMENTAL MICROBIOLOGY, VOLUME: 86, ISSUE: 13
INDEXED IN: Scopus WOS CrossRef: 24
33
TITLE: Genome-Scale Metabolic Model of the Human PathogenCandida albicans: A Promising Platform for Drug Target Prediction
AUTHORS: Viana, R; Dias, O ; Lagoa, D; Galocha, M; Rocha, I; Teixeira, MC ;
PUBLISHED: 2020, SOURCE: JOURNAL OF FUNGI, VOLUME: 6, ISSUE: 3
INDEXED IN: Scopus WOS CrossRef: 19
34
TITLE: Predicting Promoters in Phage Genomes Using Machine Learning Models
AUTHORS: Sampaio, M; Rocha, M ; Oliveira, H; Dias, O ;
PUBLISHED: 2020, SOURCE: 13th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 1005
INDEXED IN: Scopus WOS CrossRef: 2
35
TITLE: Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression
AUTHORS: Cruz, F; Lima, D; Faria, JP; Rocha, M ; Dias, O ;
PUBLISHED: 2020, SOURCE: 13th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 1005
INDEXED IN: Scopus WOS CrossRef
36
TITLE: Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production  Full Text
AUTHORS: Fernandes, BS; Dias, O ; Costa, G; Neto, AAK; Resende, TFC; Oliveira, JVC; Riano Pachon, DM; Zaiat, M; Pradella, JGC; Rocha, I;
PUBLISHED: 2019, SOURCE: BMC BIOTECHNOLOGY, VOLUME: 19, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 7
37
TITLE: iDS372, a Phenotypically Reconciled Model for the Metabolism of Streptococcus pneumoniae Strain R6  Full Text
AUTHORS: Dias, O ; Saraiva, J; Faria, C; Ramirez, M ; Pinto, F ; Rocha, I;
PUBLISHED: 2019, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 10, ISSUE: JUN
INDEXED IN: Scopus WOS CrossRef: 14
38
TITLE: Predicting promoters in phage genomes using PhagePromoter
AUTHORS: Sampaio, M; Rocha, M ; Oliveira, H; Dias, O ;
PUBLISHED: 2019, SOURCE: BIOINFORMATICS, VOLUME: 35, ISSUE: 24
INDEXED IN: Scopus WOS CrossRef: 38
39
TITLE: SamPler - a novel method for selecting parameters for gene functional annotation routines  Full Text
AUTHORS: Cruz, F; Lagoa, D; Mendes, J; Rocha, I; Ferreira, EC ; Rocha, M ; Dias, O ;
PUBLISHED: 2019, SOURCE: BMC BIOINFORMATICS, VOLUME: 20, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 4
40
TITLE: Staphylococci phages display vast genomic diversity and evolutionary relationships  Full Text
AUTHORS: Oliveira, H; Sampaio, M; Melo, LDR; Dias, O ; Pope, WH; Hatfull, GF; Azeredo, J ;
PUBLISHED: 2019, SOURCE: BMC GENOMICS, VOLUME: 20, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 52
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