1
TITLE: Deep learning for drug response prediction in cancer
AUTHORS: Baptista, D; Ferreira, PG ; Rocha, M;
PUBLISHED: 2021, SOURCE: BRIEFINGS IN BIOINFORMATICS, VOLUME: 22, ISSUE: 1
INDEXED IN: WOS CrossRef: 29
IN MY: ORCID
2
TITLE: Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease
AUTHORS: Olivia M de Goede; Daniel C Nachun; Nicole M Ferraro; Michael J Gloudemans; Abhiram S Rao; Craig Smail; Tiffany Y Eulalio; François Aguet; Bernard Ng; Jishu Xu; Alvaro N Barbeira; Stephane E Castel; Sarah Kim-Hellmuth; YoSon Park; Alexandra J Scott; Benjamin J Strober; Christopher D Brown; Xiaoquan Wen; Ira M Hall; Alexis Battle; Tuuli Lappalainen; Hae Kyung Im; Kristin G Ardlie; Sara Mostafavi; Thomas Quertermous; Karla Kirkegaard; Stephen B Montgomery; Shankara Anand; Stacey Gabriel; Gad A Getz; Aaron Graubert; Kane Hadley; Robert E Handsaker; Katherine H Huang; Xiao Li; Daniel G MacArthur; Samuel R Meier; Jared L Nedzel; Duyen T Nguyen; Ayellet V Segrè; Ellen Todres; Brunilda Balliu; Rodrigo Bonazzola; Andrew Brown; Donald F Conrad; Daniel J Cotter; Nancy Cox; Sayantan Das; Emmanouil T Dermitzakis; Jonah Einson; Barbara E Engelhardt; Eleazar Eskin; Elise D Flynn; Laure Fresard; Eric R Gamazon; Diego Garrido-Martín; Nicole R Gay; Roderic Guigó; Andrew R Hamel; Yuan He; Paul J Hoffman; Farhad Hormozdiari; Lei Hou; Brian Jo; Silva Kasela; Seva Kashin; Manolis Kellis; Alan Kwong; Xin Li; Yanyu Liang; Serghei Mangul; Pejman Mohammadi; Manuel Muñoz-Aguirre; Andrew B Nobel; Meritxell Oliva; Yongjin Park; Princy Parsana; Ferran Reverter; John M Rouhana; Chiara Sabatti; Ashis Saha; Matthew Stephens; Barbara E Stranger; Nicole A Teran; Ana Viñuela; Gao Wang; Fred Wright; Valentin Wucher; Yuxin Zou; Pedro G Ferreira ; Gen Li; Marta Melé; Esti Yeger-Lotem; Debra Bradbury; Tanya Krubit; Jeffrey A McLean; Liqun Qi; Karna Robinson; Nancy V Roche; Anna M Smith; David E Tabor; Anita Undale; Jason Bridge; Lori E Brigham; Barbara A Foster; Bryan M Gillard; Richard Hasz; Marcus Hunter; Christopher Johns; Mark Johnson; Ellen Karasik; Gene Kopen; William F Leinweber; Alisa McDonald; Michael T Moser; Kevin Myer; Kimberley D Ramsey; Brian Roe; Saboor Shad; Jeffrey A Thomas; Gary Walters; Michael Washington; Joseph Wheeler; Scott D Jewell; Daniel C Rohrer; Dana R Valley; David A Davis; Deborah C Mash; Mary E Barcus; Philip A Branton; Leslie Sobin; Laura K Barker; Heather M Gardiner; Maghboeba Mosavel; Laura A Siminoff; Paul Flicek; Maximilian Haeussler; Thomas Juettemann; James J Kent; Christopher M Lee; Conner C Powell; Kate R Rosenbloom; Magali Ruffier; Dan Sheppard; Kieron Taylor; Stephen J Trevanion; Daniel R Zerbino; Nathan S Abell; Joshua Akey; Lin Chen; Kathryn Demanelis; Jennifer A Doherty; Andrew P Feinberg; Kasper D Hansen; Peter F Hickey; Farzana Jasmine; Lihua Jiang; Rajinder Kaul; Muhammad G Kibriya; Jin Billy Li; Qin Li; Shin Lin; Sandra E Linder; Brandon L Pierce; Lindsay F Rizzardi; Andrew D Skol; Kevin S Smith; Michael Snyder; John Stamatoyannopoulos; Hua Tang; Meng Wang; Latarsha J Carithers; Ping Guan; Susan E Koester; Roger R Little; Helen M Moore; Concepcion R Nierras; Abhi K Rao; Jimmie B Vaught; Simona Volpi; ...More
PUBLISHED: 2021, SOURCE: Cell, VOLUME: 184, ISSUE: 10
INDEXED IN: Scopus CrossRef: 20
3
TITLE: A Quantitative Proteome Map of the Human Body
AUTHORS: Lihua Jiang; Meng Wang; Shin Lin; Ruiqi Jian; Xiao Li; Joanne Chan; Guanlan Dong; Huaying Fang; Aaron E Robinson; Michael P Snyder; François Aguet; Shankara Anand; Kristin G Ardlie; Stacey Gabriel; Gad Getz; Aaron Graubert; Kane Hadley; Robert E Handsaker; Katherine H Huang; Seva Kashin; Daniel G MacArthur; Samuel R Meier; Jared L Nedzel; Duyen Y Nguyen; Ayellet V Segrè; Ellen Todres; Brunilda Balliu; Alvaro N Barbeira; Alexis Battle; Rodrigo Bonazzola; Andrew Brown; Christopher D Brown; Stephane E Castel; Don Conrad; Daniel J Cotter; Nancy Cox; Sayantan Das; Olivia M de Goede; Emmanouil T Dermitzakis; Barbara E Engelhardt; Eleazar Eskin; Tiffany Y Eulalio; Nicole M Ferraro; Elise Flynn; Laure Fresard; Eric R Gamazon; Diego Garrido-Martín; Nicole R Gay; Roderic Guigó; Andrew R Hamel; Yuan He; Paul J Hoffman; Farhad Hormozdiari; Lei Hou; Hae Kyung Im; Brian Jo; Silva Kasela; Manolis Kellis; Sarah Kim-Hellmuth; Alan Kwong; Tuuli Lappalainen; Xin Li; Yanyu Liang; Serghei Mangul; Pejman Mohammadi; Stephen B Montgomery; Manuel Muñoz-Aguirre; Daniel C Nachun; Andrew B Nobel; Meritxell Oliva; YoSon Park; Yongjin Park; Princy Parsana; Ferran Reverter; John M Rouhana; Chiara Sabatti; Ashis Saha; Andrew D Skol; Matthew Stephens; Barbara E Stranger; Benjamin J Strober; Nicole A Teran; Ana Viñuela; Gao Wang; Xiaoquan Wen; Fred Wright; Valentin Wucher; Yuxin Zou; Pedro G Ferreira ; Gen Li; Marta Melé; Esti Yeger-Lotem; Mary E Barcus; Debra Bradbury; Tanya Krubit; Jeffrey A McLean; Liqun Qi; Karna Robinson; Nancy V Roche; Anna M Smith; Leslie Sobin; David E Tabor; Anita Undale; Jason Bridge; Lori E Brigham; Barbara A Foster; Bryan M Gillard; Richard Hasz; Marcus Hunter; Christopher Johns; Mark Johnson; Ellen Karasik; Gene Kopen; William F Leinweber; Alisa McDonald; Michael T Moser; Kevin Myer; Kimberley D Ramsey; Brian Roe; Saboor Shad; Jeffrey A Thomas; Gary Walters; Michael Washington; Joseph Wheeler; Scott D Jewell; Daniel C Rohrer; Dana R Valley; David A Davis; Deborah C Mash; Philip A Branton; Laura K Barker; Heather M Gardiner; Maghboeba Mosavel; Laura A Siminoff; Paul Flicek; Maximilian Haeussler; Thomas Juettemann; James J Kent; Christopher M Lee; Conner C Powell; Kate R Rosenbloom; Magali Ruffier; Dan Sheppard; Kieron Taylor; Stephen J Trevanion; Daniel R Zerbino; Nathan S Abell; Joshua Akey; Lin Chen; Kathryn Demanelis; Jennifer A Doherty; Andrew P Feinberg; Kasper D Hansen; Peter F Hickey; Farzana Jasmine; Rajinder Kaul; Muhammad G Kibriya; Jin Billy Li; Qin Li; Sandra E Linder; Brandon L Pierce; Lindsay F Rizzardi; Kevin S Smith; John Stamatoyannopoulos; Hua Tang; Latarsha J Carithers; Ping Guan; Susan E Koester; Roger R Little; Helen M Moore; Concepcion R Nierras; Abhi K Rao; Jimmie B Vaught; Simona Volpi; ...More
PUBLISHED: 2020, SOURCE: Cell, VOLUME: 183, ISSUE: 1
INDEXED IN: Scopus CrossRef: 66
4
TITLE: Cell type–specific genetic regulation of gene expression across human tissues
AUTHORS: Sarah Kim Hellmuth; François Aguet; Meritxell Oliva; Manuel Muñoz Aguirre; Silva Kasela; Valentin Wucher; Stephane E Castel; Andrew R Hamel; Ana Viñuela; Amy L Roberts; Serghei Mangul; Xiaoquan Wen; Gao Wang; Alvaro N Barbeira; Diego Garrido Martín; Brian B Nadel; Yuxin Zou; Rodrigo Bonazzola; Jie Quan; Andrew Brown; Angel Martinez Perez; José Manuel Soria; Gad Getz; Emmanouil T Dermitzakis; Kerrin S Small; Matthew Stephens; Hualin S Xi; Hae Kyung Im; Roderic Guigó; Ayellet V Segrè; Barbara E Stranger; Kristin G Ardlie; Tuuli Lappalainen; Shankara Anand; Stacey Gabriel; Gad A Getz; Aaron Graubert; Kane Hadley; Robert E Handsaker; Katherine H Huang; Seva Kashin; Xiao Li; Daniel G MacArthur; Samuel R Meier; Jared L Nedzel; Duyen T Nguyen; Ellen Todres; Brunilda Balliu; Alexis Battle; Christopher D Brown; Donald F Conrad; Daniel J Cotter; Nancy Cox; Sayantan Das; Olivia M de Goede; Jonah Einson; Barbara E Engelhardt; Eleazar Eskin; Tiffany Y Eulalio; Nicole M Ferraro; Elise D Flynn; Laure Fresard; Eric R Gamazon; Nicole R Gay; Michael J Gloudemans; Andrew R Hame; Yuan He; Paul J Hoffman; Farhad Hormozdiari; Lei Hou; Brian Jo; Manolis Kellis; Alan Kwong; Xin Li; Yanyu Liang; Pejman Mohammadi; Stephen B Montgomery; Daniel C Nachun; Andrew B Nobel; Yo Son Park; Yongjin Park; Princy Parsana; Abhiram S Rao; Ferran Reverter; John M Rouhana; Chiara Sabatti; Ashis Saha; Andrew D Skol; Benjamin J Strober; Nicole A Teran; Fred Wright; Pedro G Ferreira ; Gen Li; Marta Melé; Esti Yeger Lotem; Mary E Barcus; Debra Bradbury; Tanya Krubit; Jeffrey A McLean; Liqun Qi; ...More
PUBLISHED: 2020, SOURCE: Science, VOLUME: 369, ISSUE: 6509
INDEXED IN: Scopus
5
TITLE: Gender Differential Transcriptome in Gastric and Thyroid Cancers  Full Text
AUTHORS: Abel Sousa; Marta Ferreira; Carla Oliveira; Pedro G Ferreira ;
PUBLISHED: 2020, SOURCE: FRONTIERS IN GENETICS, VOLUME: 11
INDEXED IN: Scopus WOS CrossRef: 2
IN MY: ORCID
7
TITLE: Predicting Gastric Cancer Molecular Subtypes from Gene Expression Data  Full Text
AUTHORS: Marta Moreno; Abel Sousa; Marta Melé; Rui Oliveira; Pedro G Ferreira ;
PUBLISHED: 2020, SOURCE: Proceedings
INDEXED IN: Unpaywall
8
TITLE: The GTEx Consortium atlas of genetic regulatory effects across human tissues
AUTHORS: The GTEx Consortium; Pedro Gabriel Dias Ferreira ;
PUBLISHED: 2020, SOURCE: Science, VOLUME: 369, ISSUE: 6509
INDEXED IN: Scopus CrossRef: 636
IN MY: ORCID
9
TITLE: The impact of sex on gene expression across human tissues
AUTHORS: François Aguet; Alvaro N Barbeira; Rodrigo Bonazzola; Andrew Brown; Stephane E Castel; Brian Jo; Silva Kasela; Sarah Kim Hellmuth; Yanyu Liang; Meritxell Oliva; Elise D Flynn; Princy Parsana; Laure Fresard; Eric R Gamazon; Andrew R Hamel; Yuan He; Farhad Hormozdiari; Pejman Mohammadi; Manuel Muñoz Aguirre; Yo Son Park; Ashis Saha; Ayellet V Segrè; Benjamin J Strober; Xiaoquan Wen; Valentin Wucher; Kristin G Ardlie; Alexis Battle; Christopher D Brown; Nancy Cox; Sayantan Das; Emmanouil T Dermitzakis; Barbara E Engelhardt; Diego Garrido Martín; Nicole R Gay; Gad A Getz; Roderic Guigó; Robert E Handsaker; Paul J Hoffman; Hae Kyung Im; Seva Kashin; Alan Kwong; Tuuli Lappalainen; Xiao Li; Daniel G MacArthur; Stephen B Montgomery; John M Rouhana; Matthew Stephens; Barbara E Stranger; Ellen Todres; Ana Viñuela; Gao Wang; Yuxin Zou; Shankara Anand; Stacey Gabriel; Aaron Graubert; Kane Hadley; Katherine H Huang; Samuel R Meier; Jared L Nedzel; Duyen T Nguyen; Brunilda Balliu; Donald F Conrad; Daniel J Cotter; Olivia M deGoede; Jonah Einson; Eleazar Eskin; Tiffany Y Eulalio; Nicole M Ferraro; Michael J Gloudemans; Lei Hou; Manolis Kellis; Xin Li; Serghei Mangul; Daniel C Nachun; Andrew B Nobel; Yongjin Park; Abhiram S Rao; Ferran Reverter; Chiara Sabatti; Andrew D Skol; Nicole A Teran; Fred Wright; Pedro G Ferreira ; Gen Li; Marta Melé; Esti Yeger Lotem; Mary E Barcus; Debra Bradbury; Tanya Krubit; Jeffrey A McLean; Liqun Qi; Karna Robinson; Nancy V Roche; Anna M Smith; Leslie Sobin; David E Tabor; Anita Undale; Jason Bridge; Lori E Brigham; Barbara A Foster; ...More
PUBLISHED: 2020, SOURCE: Science, VOLUME: 369, ISSUE: 6509
INDEXED IN: Scopus
10
TITLE: The effects of death and post-mortem cold ischemia on human tissue transcriptomes
AUTHORS: Pedro G Ferreira ; Manuel Munoz Aguirre; Ferran Reverter; Caio P S Sa Godinho; Abel Sousa; Alicia Amadoz; Reza Sodaei; Marta R Hidalgo; Dmitri Pervouchine; Jose Carbonell Caballero; Ramil Nurtdinov; Alessandra Breschi; Raziel Amador; Patricia Oliveira; Cankut Cubuk; Joao Curado; Francois Aguet; Carla Oliveira ; Joaquin Dopazo; Michael Sammeth; Kristin G Ardlie; Roderic Guigo; ...More
PUBLISHED: 2018, SOURCE: NATURE COMMUNICATIONS, VOLUME: 9, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 106
IN MY: ORCID
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