Jorge Manuel de Sousa Basto Vieira


AuthID: R-000-7S2

Confirmed Publications: 124



1
TITLE: PPI Prediction from Sequences via Transfer Learning on Balanced but yet Biased Datasets: An Open Problem
AUTHORS: Alba Nogueira Rodríguez; Daniel Glez Peña; Cristina Vieira; Jorge Vieira ; Hugo López Fernández;
PUBLISHED: 2025, SOURCE: 18th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2024 in Lecture Notes in Networks and Systems, VOLUME: 1350 LNNS
INDEXED IN: Scopus CrossRef
IN MY: ORCID
2
TITLE: Predicting Which Mitophagy Proteins Are Dysregulated in Spinocerebellar Ataxia Type 3 (SCA3) Using the Auto-p2docking Pipeline  Full Text
AUTHORS: Vieira, Jorge ; Barros, Mariana; Lopez Fernandez, Hugo; Glez Pena, Daniel; Nogueira Rodriguez, Alba; Vieira, Cristina P.;
PUBLISHED: 2025, SOURCE: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, VOLUME: 26, ISSUE: 3
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID | CIÊNCIAVITAE
3
TITLE: Towards a more accurate and reliable evaluation of machine learning protein-protein interaction prediction model performance in the presence of unavoidable dataset biases
AUTHORS: Nogueira Rodriguez, Alba; Glez Pena, Daniel; Vieira, Cristina P. ; Vieira, Jorge ; Lopez Fernandez, Hugo;
PUBLISHED: 2025, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS
INDEXED IN: WOS CrossRef
IN MY: ORCID
4
TITLE: Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites
AUTHORS: Lopez Fernandez, Hugo; Pinto, Miguel; Vieira, Cristina P. ; Duque, Pedro; Reboiro Jato, Miguel; Vieira, Jorge ;
PUBLISHED: 2024, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 21, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef
IN MY: CIÊNCIAVITAE
5
TITLE: Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information
AUTHORS: Glez Pena, Daniel; Lopez Fernandez, Hugo; Duque, Pedro; Vieira, Cristina P.; Vieira, Jorge ;
PUBLISHED: 2024, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 21, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef: 1
IN MY: CIÊNCIAVITAE
6
TITLE: Multiple Lines of Evidence Support 199 SARS-CoV-2 Positively Selected Amino Acid Sites  Full Text
AUTHORS: Ferreira, Pedro ; Soares, Ricardo; Lopez Fernandez, Hugo; Vazquez, Noe; Reboiro Jato, Miguel; Vieira, Cristina P.; Vieira, Jorge ;
PUBLISHED: 2024, SOURCE: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, VOLUME: 25, ISSUE: 4
INDEXED IN: Scopus WOS CrossRef
IN MY: CIÊNCIAVITAE
7
TITLE: SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines  Full Text
AUTHORS: Reboiro Jato, Miguel; Perez Rodriguez, Daniel; Da Silva, Miguel Jose; Vila Fernandez, David; Vieira, Cristina P.; Vieira, Jorge ; Lopez Fernandez, Hugo;
PUBLISHED: 2024, SOURCE: BMC BIOINFORMATICS, VOLUME: 25, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef
IN MY: CIÊNCIAVITAE
8
9
TITLE: Auto-phylo: A Pipeline Maker for Phylogenetic Studies
AUTHORS: Hugo López Fenández; Miguel Pinto; Cristina Vieira; Pedro Duque; Miguel Reboiro Jato; Jorge Vieira ;
PUBLISHED: 2023, SOURCE: 17th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2023 in Lecture Notes in Networks and Systems, VOLUME: 743 LNNS
INDEXED IN: Scopus CrossRef: 4
IN MY: CIÊNCIAVITAE
10
TITLE: EvoPPI 2: A Web and Local Platform for the Comparison of Protein–Protein Interaction Data from Multiple Sources from the Same and Distinct Species
AUTHORS: Reboiro Jato, M; Vieira, J ; Rocha, S; Sousa, AD; López Fernández, H; Vieira, CP;
PUBLISHED: 2023, SOURCE: 16th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2022 in Lecture Notes in Networks and Systems, VOLUME: 553
INDEXED IN: Scopus CrossRef: 1
IN MY: CIÊNCIAVITAE
Page 1 of 13. Total results: 124.

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