Carlos Daniel Moutinho Machado
AuthID: R-000-QBJ
21
TITLE: Modeling the Contribution of Allosteric Regulation for Flux Control in the Central Carbon Metabolism of E. coli
AUTHORS: Daniel Machado; Markus J Herrgård; Isabel Rocha;
PUBLISHED: 2015, SOURCE: Frontiers in Bioengineering and Biotechnology, VOLUME: 3
AUTHORS: Daniel Machado; Markus J Herrgård; Isabel Rocha;
PUBLISHED: 2015, SOURCE: Frontiers in Bioengineering and Biotechnology, VOLUME: 3
22
TITLE: Editorial: Current Challenges in Modeling Cellular Metabolism
AUTHORS: Daniel Machado; Kai H Zhuang; Nikolaus Sonnenschein; Markus J Herrgård;
PUBLISHED: 2015, SOURCE: Frontiers in Bioengineering and Biotechnology, VOLUME: 3
AUTHORS: Daniel Machado; Kai H Zhuang; Nikolaus Sonnenschein; Markus J Herrgård;
PUBLISHED: 2015, SOURCE: Frontiers in Bioengineering and Biotechnology, VOLUME: 3
23
TITLE: A kinetic model for curcumin production in Escherichia coli Full Text
AUTHORS: Daniel Machado; Ligia R Rodrigues ; Isabel Rocha;
PUBLISHED: 2014, SOURCE: BIOSYSTEMS, VOLUME: 125
AUTHORS: Daniel Machado; Ligia R Rodrigues ; Isabel Rocha;
PUBLISHED: 2014, SOURCE: BIOSYSTEMS, VOLUME: 125
24
TITLE: Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism Full Text
AUTHORS: Machado, D; Herrgard, M;
PUBLISHED: 2014, SOURCE: PLoS Computational Biology, VOLUME: 10, ISSUE: 4
AUTHORS: Machado, D; Herrgard, M;
PUBLISHED: 2014, SOURCE: PLoS Computational Biology, VOLUME: 10, ISSUE: 4
25
TITLE: Random sampling of elementary flux modes in large-scale metabolic networks Full Text
AUTHORS: Daniel Machado; Zita Soons; Kiran Raosaheb Patil; Eugenio C Ferreira ; Isabel Rocha ;
PUBLISHED: 2012, SOURCE: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) in BIOINFORMATICS, VOLUME: 28, ISSUE: 18
AUTHORS: Daniel Machado; Zita Soons; Kiran Raosaheb Patil; Eugenio C Ferreira ; Isabel Rocha ;
PUBLISHED: 2012, SOURCE: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) in BIOINFORMATICS, VOLUME: 28, ISSUE: 18
26
TITLE: Exploring the gap between dynamic and constraint-based models of metabolism Full Text
AUTHORS: Daniel Machado; Rafael S Costa ; Eugenio C Ferreira ; Isabel Rocha ; Bruce Tidor;
PUBLISHED: 2012, SOURCE: METABOLIC ENGINEERING, VOLUME: 14, ISSUE: 2
AUTHORS: Daniel Machado; Rafael S Costa ; Eugenio C Ferreira ; Isabel Rocha ; Bruce Tidor;
PUBLISHED: 2012, SOURCE: METABOLIC ENGINEERING, VOLUME: 14, ISSUE: 2
27
TITLE: MULTILEVEL DYNAMIC MODELING IN BIOLOGICAL SYSTEMS Application of Hybrid Petri Nets to Network Simulation
AUTHORS: Costa, RS ; Machado, D; Neves, AR; Vinga, S ;
PUBLISHED: 2012, SOURCE: International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS) in BIOINFORMATICS: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS
AUTHORS: Costa, RS ; Machado, D; Neves, AR; Vinga, S ;
PUBLISHED: 2012, SOURCE: International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS) in BIOINFORMATICS: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS
28
TITLE: Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling
AUTHORS: Costa, RS ; Machado, D; Rocha, I ; Ferreira, EC ;
PUBLISHED: 2011, SOURCE: IET SYSTEMS BIOLOGY, VOLUME: 5, ISSUE: 3
AUTHORS: Costa, RS ; Machado, D; Rocha, I ; Ferreira, EC ;
PUBLISHED: 2011, SOURCE: IET SYSTEMS BIOLOGY, VOLUME: 5, ISSUE: 3
29
TITLE: Modeling formalisms in Systems Biology Full Text
AUTHORS: Daniel Machado; Rafael S Costa ; Miguel Rocha ; Eugenio C Ferreira ; Bruce Tidor; Isabel Rocha ;
PUBLISHED: 2011, SOURCE: AMB EXPRESS, VOLUME: 1, ISSUE: 1
AUTHORS: Daniel Machado; Rafael S Costa ; Miguel Rocha ; Eugenio C Ferreira ; Bruce Tidor; Isabel Rocha ;
PUBLISHED: 2011, SOURCE: AMB EXPRESS, VOLUME: 1, ISSUE: 1
30
TITLE: Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations Full Text
AUTHORS: Rafael S Costa ; Daniel Machado; Isabel Rocha ; Eugenio C Ferreira ;
PUBLISHED: 2010, SOURCE: BIOSYSTEMS, VOLUME: 100, ISSUE: 2
AUTHORS: Rafael S Costa ; Daniel Machado; Isabel Rocha ; Eugenio C Ferreira ;
PUBLISHED: 2010, SOURCE: BIOSYSTEMS, VOLUME: 100, ISSUE: 2
