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Marta Isabel Belchior Lopes
AuthID:
R-000-D28
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Document Source:
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Document Type:
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Article (35)
Proceedings Paper (15)
Review (6)
Editorial Material (1)
Unpublished (1)
Book Chapter (1)
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Confirmed Publications: 59
1
TITLE:
A toolbox of machine learning software to support microbiome analysis
Full Text
AUTHORS:
Marcos Zambrano, Laura Judith
; Lopez Molina, Victor Manuel; Bakir Gungor, Burcu; Frohme, Marcus; Karaduzovic Hadziabdic, Kanita; Klammsteiner, Thomas; Ibrahimi, Eliana; Lahti, Leo;
Loncar Turukalo, Tatjana
; Dhamo, Xhilda; Simeon, Andrea;
Nechyporenko, Alina
; Pio, Gianvito; Przymus, Piotr; Sampri, Alexia; Trajkovik, Vladimir; Lacruz Pleguezuelos, Blanca; Aasmets, Oliver;
Araujo, Ricardo
; Anagnostopoulos, Ioannis;
Aydemir, Oender;
Berland, Magali;
Calle, M. Luz;
Ceci, Michelangelo;
Duman, Hatice;
Guendogdu, Aycan;
Havulinna, Aki S.
;
Kaka Bra, Kardokh Hama Najib;
Kalluci, Eglantina;
Karav, Sercan;
Lode, Daniel;
Lopes, Marta B.
;
May, Patrick;
Nap, Bram;
Nedyalkova, Miroslava;
Paciencia, Ines
;
Pasic, Lejla;
Pujolassos, Meritxell;
Shigdel, Rajesh;
Susin, Antonio;
Thiele, Ines;
Truica, Ciprian Octavian;
Wilmes, Paul
;
Yilmaz, Ercument;
Yousef, Malik;
Claesson, Marcus Joakim
;
Truu, Jaak;
Carrillo de Santa Pau, Enrique;
...More
PUBLISHED:
2023
,
SOURCE:
FRONTIERS IN MICROBIOLOGY,
VOLUME:
14
INDEXED IN:
Scopus
WOS
Unpaywall
2
TITLE:
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
Full Text
AUTHORS:
Domenica D’Elia; Jaak Truu; Leo Lahti; Magali Berland; Georgios Papoutsoglou; Michelangelo Ceci; Aldert Zomer;
Marta Lopes
; Eliana Ibrahimi; Aleksandra Gruca;
Alina Nechyporenko
; Marcus Frohme; Thomas Klammsteiner; Enrique Carrillo-de Santa Pau;
Laura Judith Marcos Zambrano
;
Karel Hron
; Gianvito Pio; Andrea Simeon; Ramona Suharoschi;
Isabel Moreno Indias
;
Andriy Temko;
Miroslava Nedyalkova;
Elena-Simona Apostol
;
Ciprian-Octavian Truică;
Rajesh Shigdel;
Jasminka Hasić Telalović
;
Erik Bongcam Rudloff;
Piotr Przymus;
Naida Babić Jordamović
;
Laurent Falquet;
Sonia Tarazona;
Alexia Sampri;
Gaetano Isola;
David Pérez Serrano;
Vladimir Trajkovik;
Lubos Klucar;
Tatjana Loncar Turukalo
;
Aki Havulinna
;
Christian Jansen;
Randi Bertelsen;
Marcus Joakim Claesson;
...More
PUBLISHED:
2023
,
SOURCE:
Frontiers in Microbiology,
VOLUME:
14
INDEXED IN:
Scopus
CrossRef
:
1
Unpaywall
3
TITLE:
Causal Graph Discovery for Explainable Insights on Marine Biotoxin Shellfish Contamination
AUTHORS:
Diogo Ribeiro; Filipe Ferraz;
Marta Lopes
; Susana Rodrigues;
Pedro Reis Costa
;
Susana Vinga
;
Alexandra Carvalho
;
PUBLISHED:
2023
,
SOURCE:
24th International Conference on Intelligent Data Engineering and Automated Learning, IDEAL 2023
in
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
VOLUME:
14404 LNCS
INDEXED IN:
Scopus
CrossRef
Unpaywall
4
TITLE:
Disclosing transcriptomics network-based signatures of glioma heterogeneity using sparse methods
Full Text
AUTHORS:
Martins, Sofia;
Coletti, Roberta
;
Lopes, Marta B.
;
PUBLISHED:
2023
,
SOURCE:
BIODATA MINING,
VOLUME:
16,
ISSUE:
1
INDEXED IN:
Scopus
WOS
CrossRef
:
1
5
TITLE:
Evaluating the Causal Role of Environmental Data in Shellfish Biotoxin Contamination on the Portuguese Coast
AUTHORS:
Ana Rita Baião;
Carolina Peixoto
;
Marta Lopes
;
Pedro Reis Costa
; Alexandra Carvalho;
Susana Vinga
;
PUBLISHED:
2023
,
SOURCE:
22nd EPIA Conference on Artificial Intelligence, EPIA 2023
in
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
VOLUME:
14116 LNAI
INDEXED IN:
Scopus
CrossRef
Unpaywall
6
TITLE:
Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization
Full Text
AUTHORS:
Peixoto, Carolina
;
Lopes, Marta B.
; Martins, Marta;
Casimiro, Sandra
; Sobral, Daniel;
Grosso, Ana Rita
; Abreu, Catarina; Macedo, Daniela;
Costa, Ana Lucia
; Pais, Helena; Alvim, Cecilia; Mansinho, Andre; Filipe, Pedro;
Pedro C. Magalhães
;
Fernandes, Afonso
; Borralho, Paula;
Ferreira, Cristina
; Malaquias, Joao; Quintela, Antonio;
Kaplan, Shannon
;
Golkaram, Mahdi;
Salmans, Michael;
Khan, Nafeesa;
Vijayaraghavan, Raakhee;
Zhang, Shile;
Pawlowski, Traci;
Godsey, Jim;
So, Alex;
Liu, Li;
Costa, Luis
;
Vinga, Susana
;
...More
PUBLISHED:
2023
,
SOURCE:
BMC BIOINFORMATICS,
VOLUME:
24,
ISSUE:
1
INDEXED IN:
Scopus
WOS
7
TITLE:
Machine learning approaches in microbiome research: challenges and best practices
Full Text
AUTHORS:
Papoutsoglou, Georgios; Tarazona, Sonia;
Lopes, Marta B.
; Klammsteiner, Thomas; Ibrahimi, Eliana; Eckenberger, Julia; Novielli, Pierfrancesco; Tonda, Alberto; Simeon, Andrea; Shigdel, Rajesh;
Bereux, Stephane
; Vitali, Giacomo; Tangaro, Sabina; Lahti, Leo; Temko, Andriy;
Claesson, Marcus J.
; Berland, Magali;
PUBLISHED:
2023
,
SOURCE:
FRONTIERS IN MICROBIOLOGY,
VOLUME:
14
INDEXED IN:
Scopus
WOS
CrossRef
:
3
Unpaywall
8
TITLE:
Multi-omics Data Integration and Network Inference for Biomarker Discovery in Glioma
AUTHORS:
Coletti, Roberta
;
Lopes, Marta B.
;
PUBLISHED:
2023
,
SOURCE:
22nd EPIA Conference on Artificial Intelligence (EPIA)
in
PROGRESS IN ARTIFICIAL INTELLIGENCE, EPIA 2023, PT II,
VOLUME:
14116
INDEXED IN:
Scopus
WOS
CrossRef
Unpaywall
9
TITLE:
Overview of data preprocessing for machine learning applications in human microbiome research
Full Text
AUTHORS:
Ibrahimi, Eliana;
Lopes, Marta B.
; Dhamo, Xhilda; Simeon, Andrea; Shigdel, Rajesh;
Hron, Karel
;
Stres, Blaz
; D'Elia, Domenica; Berland, Magali;
Marcos Zambrano, Laura Judith
;
PUBLISHED:
2023
,
SOURCE:
FRONTIERS IN MICROBIOLOGY,
VOLUME:
14
INDEXED IN:
Scopus
WOS
CrossRef
Unpaywall
10
TITLE:
Regularized Generalized Linear Models to Disclose Host-Microbiome Associations in Colorectal Cancer
AUTHORS:
Eliana Ibrahimi;
Mina Norouzirad
; Melisa Meto;
Marta B Lopes
;
PUBLISHED:
2023
,
SOURCE:
ACM International Conference Proceeding Series
INDEXED IN:
Scopus
CrossRef
Unpaywall
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