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TITLE: Development and application of efficient pathway enumeration algorithms for metabolic engineering applications Full Text
AUTHORS: Liu, F; Vilaca, P; Rocha, I; Rocha, M ;
PUBLISHED: 2015, SOURCE: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, VOLUME: 118, ISSUE: 2

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TITLE: Integrating data from heterogeneous DNA microarray platforms
AUTHORS: Eduardo Valente; Miguel Rocha ;
PUBLISHED: 2015, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 12, ISSUE: 4

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TITLE: Microarray gene expression data integration: An application to brain tumor grade determination
AUTHORS: Valente, E; Rocha, M ;
PUBLISHED: 2015, SOURCE: 9th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2015 in Advances in Intelligent Systems and Computing, VOLUME: 375

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TITLE: Reconstructing genome-scale metabolic models with merlin Full Text
AUTHORS: Oscar Dias; Miguel Rocha ; Eugenio C Ferreira; Isabel Rocha;
PUBLISHED: 2015, SOURCE: NUCLEIC ACIDS RESEARCH, VOLUME: 43, ISSUE: 8

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TITLE: Reconstructing Transcriptional Regulatory Networks Using Data Integration and Text Mining
AUTHORS: Pereira, RT; Costa, H; Cameiro, S; Rocha, M ; Mendes, R;
PUBLISHED: 2015, SOURCE: IEEE International Conference on Bioinformatics and Biomedicine in PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE

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TITLE: Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach Full Text
AUTHORS: David Henriques; Miguel Rocha ; Julio Saez Rodriguez; Julio R Banga;
PUBLISHED: 2015, SOURCE: BIOINFORMATICS, VOLUME: 31, ISSUE: 18

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TITLE: Transcript-based Reannotation for Microarray Probesets
AUTHORS: Eduardo Valente; Miguel Rocha ;
PUBLISHED: 2015, SOURCE: 30th ACM Symposium on Applied Computing (SAC) in 30TH ANNUAL ACM SYMPOSIUM ON APPLIED COMPUTING, VOLS I AND II, VOLUME: 13-17-April-2015

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