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TITLE: Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus  Full Text
AUTHORS: Happi, Christian; Adetifa, Ifedayo; Mbala, Placide; Njouom, Richard; Nakoune, Emmanuel; Happi, Anise; Ndodo, Nnaemeka; Ayansola, Oyeronke; Mboowa, Gerald; Bedford, Trevor; Neher, Richard A.; Roemer, Cornelius; Hodcroft, Emma; Tegally, Houriiyah; O'Toole, Aine; Rambaut, Andrew; Pybus, Oliver; Kraemer, Moritz U. G.; Wilkinson, Eduan; Isidro, Joana; Borges, Vitor; Pinto, Miguel; Gomes, Joao Paulo; Freitas, Lucas; Resende, Paola C.; Lee, Raphael T. C.; Maurer Stroh, Sebastian; Baxter, Cheryl; Lessells, Richard; Ogwell, Ahmed E.; Kebede, Yenew; Tessema, Sofonias K.; de Oliveira, Tulio; ...More
PUBLISHED: 2022, SOURCE: PLOS BIOLOGY, VOLUME: 20, ISSUE: 8
INDEXED IN: Scopus WOS
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TITLE: Persistent HIV-1 replication maintains the tissue reservoir during therapy  Full Text
AUTHORS: Ramon Lorenzo Redondo; Helen R Fryer; Trevor Bedford; Eun Young Kim; John Archer; Sergei Kosakovsky K Pond; Yoon Seok Chung; Sudhir Penugonda; Jeffrey G Chipman; Courtney V Fletcher; Timothy W Schacker; Michael H Malim; Andrew Rambaut; Ashley T Haase; Angela . McLean; Steven M Wolinsky;
PUBLISHED: 2016, SOURCE: NATURE, VOLUME: 530, ISSUE: 7588
INDEXED IN: Scopus WOS
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TITLE: The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates  Full Text
AUTHORS: Bram Vrancken; Andrew Rambaut; Marc A Suchard; Alexei Drummond; Guy Baele; Inge Derdelinckx; Eric Van Wijngaerden; Anne Mieke Vandamme; Kristel Van Laethem; Philippe Lemey;
PUBLISHED: 2014, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 10, ISSUE: 4
INDEXED IN: Scopus WOS CrossRef
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TITLE: The early spread and epidemic ignition of HIV-1 in human populations
AUTHORS: Nuno R Faria; Andrew Rambaut; Marc A Suchard; Guy Baele; Trevor Bedford; Melissa J Ward; Andrew J Tatem; Joao D Sousa; Nimalan Arinaminpathy; Jacques Pepin; David Posada; Martine Peeters; Oliver G Pybus; Philippe Lemey;
PUBLISHED: 2014, SOURCE: SCIENCE, VOLUME: 346, ISSUE: 6205
INDEXED IN: Scopus WOS CrossRef
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TITLE: Possible Footprints of APOBEC3F and/or Other APOBEC3 Deaminases, but Not APOBEC3G, on HIV-1 from Patients with Acute/Early and Chronic Infections
AUTHORS: Andrew E Armitage; Koen Deforche; John J Welch; Kristel Van Laethem; Ricardo Camacho; Andrew Rambaut; Astrid K N Iversen;
PUBLISHED: 2014, SOURCE: JOURNAL OF VIROLOGY, VOLUME: 89, ISSUE: 21
INDEXED IN: Scopus WOS CrossRef
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TITLE: Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework
AUTHORS: Bram Vrancken; Andrew Rambaut; Guy Baele; Anne Mieke Vandamme; Kristel Van Laethem; Eric Van Wijngaerden; Alexei Drummond; Marc Suchard; Philippe Lemey;
PUBLISHED: 2013, SOURCE: International Work-Conference on Bioinformatics and Biomedical Engineering in PROCEEDINGS IWBBIO 2013: INTERNATIONAL WORK-CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING
INDEXED IN: WOS
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TITLE: Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics  Full Text
AUTHORS: Philippe Lemey; Sergei Kosakovsky K Pond; Alexei J Drummond; Oliver G Pybus; Beth Shapiro; Helena Barroso; Nuno Taveira; Andrew Rambaut;
PUBLISHED: 2008, SOURCE: INFECTION GENETICS AND EVOLUTION, VOLUME: 8, ISSUE: 4
INDEXED IN: WOS
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TITLE: Estimating the relative contribution of dNTP pool imbalance and APOBEC3G/3F editing to HIV evolution in vivo
AUTHORS: Koen Deforche; Ricardo Camacho; Kristel Van Laethem; Beth Shapiro; Yves Moreau; Andrew Rambaut; Anne Mieke Vandamme ; Philippe Lemey;
PUBLISHED: 2007, SOURCE: JOURNAL OF COMPUTATIONAL BIOLOGY, VOLUME: 14, ISSUE: 8
INDEXED IN: Scopus WOS CrossRef
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TITLE: Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: Subtype G is a circulating recombinant form
AUTHORS: Ana B Abecasis ; Philippe Lemey; Nicole Vidal; Tulio de Oliveira; Martine Peeters; Ricardo Camacho; Beth Shapiro; Andrew Rambaut; Anne Mieke Vandamme ;
PUBLISHED: 2007, SOURCE: JOURNAL OF VIROLOGY, VOLUME: 81, ISSUE: 16
INDEXED IN: Scopus WOS CrossRef
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