Paulo Ricardo Carvalho Vilaça
AuthID: R-000-SBZ
1
TITLE: MEMOTE for standardized genome-scale metabolic model testing
AUTHORS: Christian Lieven; Moritz E Beber; Brett G Olivier; Frank T Bergmann; Meric Ataman; Parizad Babaei; Jennifer A Bartell; Lars M Blank; Siddharth Chauhan; Kevin Correia; Christian Diener; Andreas Draeger; Birgitta E Ebert; Janaka N Edirisinghe; Jose P Faria; Adam M Feist; Georgios Fengos; Ronan M T Fleming; Beatriz Garcia Jimenez; Vassily Hatzimanikatis; ...More
PUBLISHED: 2020, SOURCE: NATURE BIOTECHNOLOGY, VOLUME: 38, ISSUE: 3
AUTHORS: Christian Lieven; Moritz E Beber; Brett G Olivier; Frank T Bergmann; Meric Ataman; Parizad Babaei; Jennifer A Bartell; Lars M Blank; Siddharth Chauhan; Kevin Correia; Christian Diener; Andreas Draeger; Birgitta E Ebert; Janaka N Edirisinghe; Jose P Faria; Adam M Feist; Georgios Fengos; Ronan M T Fleming; Beatriz Garcia Jimenez; Vassily Hatzimanikatis; ...More
PUBLISHED: 2020, SOURCE: NATURE BIOTECHNOLOGY, VOLUME: 38, ISSUE: 3
INDEXED IN: 
Scopus 
WOS
Scopus WOS2
TITLE: In Silico Predictions for Fucoxanthin Production by the Diatom Phaeodactylum Tricornutum
AUTHORS: Claudia M Bauer; Paulo Vilaca; Fernanda Ramlov; Eva Regina de Oliveira; Debora Q Cabral; Caroline Schmitz; Rafaela Gordo Correa; Miguel Rocha ; Marcelo Maraschin;
PUBLISHED: 2019, SOURCE: 12th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 803
AUTHORS: Claudia M Bauer; Paulo Vilaca; Fernanda Ramlov; Eva Regina de Oliveira; Debora Q Cabral; Caroline Schmitz; Rafaela Gordo Correa; Miguel Rocha ; Marcelo Maraschin;
PUBLISHED: 2019, SOURCE: 12th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 803
INDEXED IN: Scopus WOS
Scopus WOS3
TITLE: Turnover Dependent Phenotypic Simulation: A Quantitative Constraint-Based Simulation Method That Accommodates All Main Strain Design Strategies
AUTHORS: Rui Pereira; Paulo Vilaca; Paulo Maia; Jens Nielsen; Isabel Rocha;
PUBLISHED: 2019, SOURCE: ACS SYNTHETIC BIOLOGY, VOLUME: 8, ISSUE: 5
AUTHORS: Rui Pereira; Paulo Vilaca; Paulo Maia; Jens Nielsen; Isabel Rocha;
PUBLISHED: 2019, SOURCE: ACS SYNTHETIC BIOLOGY, VOLUME: 8, ISSUE: 5
INDEXED IN: Scopus WOS
Scopus WOS4
TITLE: Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate Full Text
AUTHORS: Sofia Ferreira; Rui Pereira; Filipe Liu; Paulo Vilaca; Isabel Rocha;
PUBLISHED: 2019, SOURCE: BIOTECHNOLOGY FOR BIOFUELS, VOLUME: 12, ISSUE: 1
AUTHORS: Sofia Ferreira; Rui Pereira; Filipe Liu; Paulo Vilaca; Isabel Rocha;
PUBLISHED: 2019, SOURCE: BIOTECHNOLOGY FOR BIOFUELS, VOLUME: 12, ISSUE: 1
INDEXED IN: Scopus WOS
Scopus WOS5
TITLE: Genome-Wide Semi-Automated Annotation of Transporter Systems Full Text
AUTHORS: Oscar Dias; Daniel Gomes; Paulo Vilaca; Joao Cardoso; Miguel Rocha ; Eugenio C Ferreira; Isabel Rocha;
PUBLISHED: 2017, SOURCE: IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 14, ISSUE: 2
AUTHORS: Oscar Dias; Daniel Gomes; Paulo Vilaca; Joao Cardoso; Miguel Rocha ; Eugenio C Ferreira; Isabel Rocha;
PUBLISHED: 2017, SOURCE: IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 14, ISSUE: 2
INDEXED IN: Scopus WOS
Scopus WOS6
TITLE: Development and application of efficient pathway enumeration algorithms for metabolic engineering applications Full Text
AUTHORS: Liu, F; Vilaca, P; Rocha, I; Rocha, M ;
PUBLISHED: 2015, SOURCE: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, VOLUME: 118, ISSUE: 2
AUTHORS: Liu, F; Vilaca, P; Rocha, I; Rocha, M ;
PUBLISHED: 2015, SOURCE: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, VOLUME: 118, ISSUE: 2
7
TITLE: CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data Full Text
AUTHORS: Rafael Carreira; Pedro Evangelista; Paulo Maia; Paulo Vilaca; Marcellinus Pont; Jean Francois Tomb; Isabel Rocha; Miguel Rocha ;
PUBLISHED: 2014, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 8, ISSUE: 1
AUTHORS: Rafael Carreira; Pedro Evangelista; Paulo Maia; Paulo Vilaca; Marcellinus Pont; Jean Francois Tomb; Isabel Rocha; Miguel Rocha ;
PUBLISHED: 2014, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 8, ISSUE: 1
8
TITLE: An integrated network visualization framework towards metabolic engineering applications Full Text
AUTHORS: Alberto Noronha; Paulo Vilaca; Miguel Rocha ;
PUBLISHED: 2014, SOURCE: BMC BIOINFORMATICS, VOLUME: 15, ISSUE: 1
AUTHORS: Alberto Noronha; Paulo Vilaca; Miguel Rocha ;
PUBLISHED: 2014, SOURCE: BMC BIOINFORMATICS, VOLUME: 15, ISSUE: 1
9
TITLE: Network Visualization Tools to Enhance Metabolic Engineering Platforms
AUTHORS: Noronha, A; Vilaca, P; Rocha, M ;
PUBLISHED: 2013, SOURCE: Advances in Intelligent Systems and Computing, VOLUME: 222
AUTHORS: Noronha, A; Vilaca, P; Rocha, M ;
PUBLISHED: 2013, SOURCE: Advances in Intelligent Systems and Computing, VOLUME: 222
10
TITLE: An integrated computational environment for elementary modes analysis of biochemical networks
AUTHORS: Paulo Maia; Paulo Vilaca; Isabel Rocha ; Marcellinus Pont; Jean Francois Tomb; Miguel Rocha ;
PUBLISHED: 2012, SOURCE: INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, VOLUME: 6, ISSUE: 4
AUTHORS: Paulo Maia; Paulo Vilaca; Isabel Rocha ; Marcellinus Pont; Jean Francois Tomb; Miguel Rocha ;
PUBLISHED: 2012, SOURCE: INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, VOLUME: 6, ISSUE: 4
