Marie-France Sagot
AuthID: R-001-EXH
1
TITLE: Totoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations Full Text
AUTHORS: Ferrarini, MG; Ziska, I; Andrade, R; Julien Laferriere, A; Duchemin, L; Cesar, RM; Mary, A; Vinga, S; Sagot, MF;
PUBLISHED: 2022, SOURCE: FRONTIERS IN GENETICS, VOLUME: 13
AUTHORS: Ferrarini, MG; Ziska, I; Andrade, R; Julien Laferriere, A; Duchemin, L; Cesar, RM; Mary, A; Vinga, S; Sagot, MF;
PUBLISHED: 2022, SOURCE: FRONTIERS IN GENETICS, VOLUME: 13
INDEXED IN: 
WOS
WOS2
TITLE: A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog
AUTHORS: Borderes, M; Gasc, C; Prestat, E; Ferrarini, MG; Vinga, S ; Boucinha, L; Sagot, MF;
PUBLISHED: 2021, SOURCE: NAR GENOMICS AND BIOINFORMATICS, VOLUME: 3, ISSUE: 1
AUTHORS: Borderes, M; Gasc, C; Prestat, E; Ferrarini, MG; Vinga, S ; Boucinha, L; Sagot, MF;
PUBLISHED: 2021, SOURCE: NAR GENOMICS AND BIOINFORMATICS, VOLUME: 3, ISSUE: 1
INDEXED IN: WOS
WOS3
TITLE: MOMO - multi-objective metabolic mixed integer optimization: application to yeast strain engineering Full Text
AUTHORS: Ricardo Andrade; Mahdi Doostmohammadi; Joao L Santos; Marie France Sagot; Nuno P Mira; Susana Vinga ;
PUBLISHED: 2020, SOURCE: BMC BIOINFORMATICS, VOLUME: 21, ISSUE: 1
AUTHORS: Ricardo Andrade; Mahdi Doostmohammadi; Joao L Santos; Marie France Sagot; Nuno P Mira; Susana Vinga ;
PUBLISHED: 2020, SOURCE: BMC BIOINFORMATICS, VOLUME: 21, ISSUE: 1
INDEXED IN: 
Scopus WOS
Scopus WOS4
TITLE: The relevance of enzyme specificity for coenzymes and the presence of 6-phosphogluconate dehydrogenase for polyhydroxyalkanoates production in the metabolism of Pseudomonas sp. LFM046 Full Text
AUTHORS: Juliana Cardinali Rezende; Alex Di Genova; Rafael A T P S Nahat; Alexander Steinbuechel; Marie France Sagot; Rafael S Costa; Henrique C Oliveira; Marilda K Taciro; Luiziana F Silva; Jose Gregorio C Gomez;
PUBLISHED: 2020, SOURCE: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, VOLUME: 163
AUTHORS: Juliana Cardinali Rezende; Alex Di Genova; Rafael A T P S Nahat; Alexander Steinbuechel; Marie France Sagot; Rafael S Costa; Henrique C Oliveira; Marilda K Taciro; Luiziana F Silva; Jose Gregorio C Gomez;
PUBLISHED: 2020, SOURCE: INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, VOLUME: 163
INDEXED IN: Scopus WOS
Scopus WOS5
TITLE: BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits Full Text
AUTHORS: Alexey Dudnik; Filipa F Almeida; Ricardo Andrade; Barbara Avila; Pilar Banados; Diane Barbay; Jean Etienne Bassard; Mounir Benkoulouche; Michael Bott; Adelaide Braga; Dario Breitel; Rex Brennan; Laurent Bulteau; Celine Chanforan; Ines Costa; Rafael S Costa; Mahdi Doostmohammadi; Nuno Faria; Chengyong Y Feng; Armando Fernandes; ...More
PUBLISHED: 2018, SOURCE: PHYTOCHEMISTRY REVIEWS, VOLUME: 17, ISSUE: 2
AUTHORS: Alexey Dudnik; Filipa F Almeida; Ricardo Andrade; Barbara Avila; Pilar Banados; Diane Barbay; Jean Etienne Bassard; Mounir Benkoulouche; Michael Bott; Adelaide Braga; Dario Breitel; Rex Brennan; Laurent Bulteau; Celine Chanforan; Ines Costa; Rafael S Costa; Mahdi Doostmohammadi; Nuno Faria; Chengyong Y Feng; Armando Fernandes; ...More
PUBLISHED: 2018, SOURCE: PHYTOCHEMISTRY REVIEWS, VOLUME: 17, ISSUE: 2
INDEXED IN: Scopus WOS
Scopus WOS6
TITLE: OptPipe - a pipeline for optimizing metabolic engineering targets Full Text
AUTHORS: Andras Hartmann; Ana Vila Santa; Nicolai Kallscheuer; Michael Vogt; Alice Julien Laferriere; Marie France Sagot; Jan Marienhagen; Susana Vinga ;
PUBLISHED: 2017, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 11, ISSUE: 1
AUTHORS: Andras Hartmann; Ana Vila Santa; Nicolai Kallscheuer; Michael Vogt; Alice Julien Laferriere; Marie France Sagot; Jan Marienhagen; Susana Vinga ;
PUBLISHED: 2017, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 11, ISSUE: 1
INDEXED IN: Scopus WOS
Scopus WOS7
TITLE: DegreeCox - a network-based regularization method for survival analysis
AUTHORS: André Veríssimo; Arlindo Limede Oliveira; Marie France Sagot; Susana Vinga;
PUBLISHED: 2016, SOURCE: BMC Bioinformatics, VOLUME: 17, ISSUE: S-16
AUTHORS: André Veríssimo; Arlindo Limede Oliveira; Marie France Sagot; Susana Vinga;
PUBLISHED: 2016, SOURCE: BMC Bioinformatics, VOLUME: 17, ISSUE: S-16
INDEXED IN: 
DBLP
DBLP8
TITLE: DegreeCox - a network-based regularization method for survival analysis Full Text
AUTHORS: Verissimo, A; Oliveira, AL ; Sagot, MF; Vinga, S ;
PUBLISHED: 2016, SOURCE: 10th International Workshop on Machine Learning in Systems Biology (MLSB) in BMC BIOINFORMATICS, VOLUME: 17
AUTHORS: Verissimo, A; Oliveira, AL ; Sagot, MF; Vinga, S ;
PUBLISHED: 2016, SOURCE: 10th International Workshop on Machine Learning in Systems Biology (MLSB) in BMC BIOINFORMATICS, VOLUME: 17
INDEXED IN: Scopus WOS
Scopus WOS9
TITLE: Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches Full Text
AUTHORS: Nuno D Mendes ; Steffen Heyne; Ana T Freitas ; Marie France Sagot; Rolf Backofen;
PUBLISHED: 2012, SOURCE: BIOINFORMATICS, VOLUME: 28, ISSUE: 23
AUTHORS: Nuno D Mendes ; Steffen Heyne; Ana T Freitas ; Marie France Sagot; Rolf Backofen;
PUBLISHED: 2012, SOURCE: BIOINFORMATICS, VOLUME: 28, ISSUE: 23
10
TITLE: EIC Editorial Full Text
AUTHORS: Marie France Sagot;
PUBLISHED: 2012, SOURCE: IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 9, ISSUE: 6
AUTHORS: Marie France Sagot;
PUBLISHED: 2012, SOURCE: IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 9, ISSUE: 6
INDEXED IN: WOS
WOS