41
TITLE: Variational Autoencoders and Evolutionary Algorithms for Targeted Novel Enzyme Design
AUTHORS: Martins, Miguel; Rocha, Miguel ; Pereira, Vitor ;
PUBLISHED: 2022, SOURCE: IEEE Congress on Evolutionary Computation (CEC) in 2022 IEEE CONGRESS ON EVOLUTIONARY COMPUTATION (CEC)
INDEXED IN: Scopus WOS CrossRef
43
TITLE: Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses
AUTHORS: Dugourd, A; Kuppe, C; Sciacovelli, M; Gjerga, E; Gabor, A; Emdal, KB; Vieira, V; Bekker Jensen, DB; Kranz, J; Bindels, EMJ; Costa, ASH; Sousa, A; Beltrao, P; Rocha, M ; Olsen, JV; Frezza, C; Kramann, R; Saez Rodriguez, J;
PUBLISHED: 2021, SOURCE: MOLECULAR SYSTEMS BIOLOGY, VOLUME: 17, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 92
44
TITLE: Combining Multi-objective Evolutionary Algorithms with Deep Generative Models Towards Focused Molecular Design
AUTHORS: Sousa, T; Correia, J; Pereira, V ; Rocha, M ;
PUBLISHED: 2021, SOURCE: 24th International Conference on the Applications of Evolutionary Computation, EvoApplications 2021 held as Part of EvoStar 2021 in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), VOLUME: 12694 LNCS
INDEXED IN: Scopus CrossRef: 3
45
TITLE: Deep learning for drug response prediction in cancer
AUTHORS: Baptista, D; Ferreira, PG ; Rocha, M ;
PUBLISHED: 2021, SOURCE: BRIEFINGS IN BIOINFORMATICS, VOLUME: 22, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 194
46
TITLE: Generative Deep Learning for Targeted Compound Design  Full Text
AUTHORS: Sousa, T; Correia, J; Pereira, V ; Rocha, M ;
PUBLISHED: 2021, SOURCE: JOURNAL OF CHEMICAL INFORMATION AND MODELING, VOLUME: 61, ISSUE: 11
INDEXED IN: Scopus WOS CrossRef: 63
47
TITLE: Going virtual and going wide: comparing Team-Based Learning in-class versus online and across disciplines  Full Text
AUTHORS: Silva, ECE; Lino Neto, T ; Ribeiro, E ; Rocha, M ; Costa, MJ ;
PUBLISHED: 2021, SOURCE: EDUCATION AND INFORMATION TECHNOLOGIES, VOLUME: 27, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef: 17 Handle
48
TITLE: MEWpy: a computational strain optimization workbench in Python  Full Text
AUTHORS: Pereira, V ; Cruz, F; Rocha, M ;
PUBLISHED: 2021, SOURCE: BIOINFORMATICS, VOLUME: 37, ISSUE: 16
INDEXED IN: Scopus WOS CrossRef: 16
49
TITLE: Model-guided development of an evolutionarily stable yeast chassis  Full Text
AUTHORS: Pereira, F ; Lopes, H; Maia, P; Meyer, B; Nocon, J; Jouhten, P; Konstantinidis, D; Kafkia, E; Rocha, M ; Kotter, P; Rocha, I; Patil, KR;
PUBLISHED: 2021, SOURCE: MOLECULAR SYSTEMS BIOLOGY, VOLUME: 17, ISSUE: 7
INDEXED IN: Scopus WOS CrossRef: 10
50
TITLE: NMRFinder: a novel method for 1D H-1-NMR metabolite annotation
AUTHORS: Cardoso, S; Cabral, D; Maraschin, M; Rocha, M ;
PUBLISHED: 2021, SOURCE: METABOLOMICS, VOLUME: 17, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef: 2
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