Oscar Manuel Lima Dias
AuthID: R-000-DYT
1
TITLE: Systems biology's role in leveraging microalgal biomass potential: Current status and future perspectives Full Text
AUTHORS: Cunha, Emanuel; Sousa, Vitor; Geada, Pedro; Teixeira, Jose A.; Vicente, Antonio A. ; Dias, Oscar;
PUBLISHED: 2023, SOURCE: ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS, VOLUME: 69
AUTHORS: Cunha, Emanuel; Sousa, Vitor; Geada, Pedro; Teixeira, Jose A.; Vicente, Antonio A. ; Dias, Oscar;
PUBLISHED: 2023, SOURCE: ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS, VOLUME: 69
2
TITLE: TranSyT, an innovative framework for identifying transport systems Full Text
AUTHORS: Cunha, Emanuel; Lagoa, Davide; Faria, Jose P.; Liu, Filipe; Henry, Christopher S.; Dias, Oscar;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 8
AUTHORS: Cunha, Emanuel; Lagoa, Davide; Faria, Jose P.; Liu, Filipe; Henry, Christopher S.; Dias, Oscar;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 8
INDEXED IN: 
Scopus 
WOS
Scopus WOS3
TITLE: The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber Full Text
AUTHORS: Cunha, Emanuel; Silva, Miguel; Chaves, Ines; Demirci, Huseyin; Lagoa, Davide Rafael; Lima, Diogo; Rocha, Miguel; Rocha, Isabel; Dias, Oscar;
PUBLISHED: 2023, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 19, ISSUE: 9
AUTHORS: Cunha, Emanuel; Silva, Miguel; Chaves, Ines; Demirci, Huseyin; Lagoa, Davide Rafael; Lima, Diogo; Rocha, Miguel; Rocha, Isabel; Dias, Oscar;
PUBLISHED: 2023, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 19, ISSUE: 9
INDEXED IN: Scopus WOS
Scopus WOS4
TITLE: Metabolic reconstruction of the human pathogen Candida auris: using a cross-species approach for drug target prediction Full Text
AUTHORS: Viana, Romeu; Carreiro, Tiago; Couceiro, Diogo; Dias, Oscar; Rocha, Isabel; Teixeira, Miguel Cacho;
PUBLISHED: 2023, SOURCE: FEMS YEAST RESEARCH, VOLUME: 23
AUTHORS: Viana, Romeu; Carreiro, Tiago; Couceiro, Diogo; Dias, Oscar; Rocha, Isabel; Teixeira, Miguel Cacho;
PUBLISHED: 2023, SOURCE: FEMS YEAST RESEARCH, VOLUME: 23
INDEXED IN: Scopus WOS
Scopus WOS5
TITLE: Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao; Sampaio, Marta; Dias, Oscar;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao; Sampaio, Marta; Dias, Oscar;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS
Scopus WOS6
TITLE: A Genome-Scale Metabolic Model for the Human Pathogen Candida Parapsilosis and Early Identification of Putative Novel Antifungal Drug Targets Full Text
AUTHORS: Viana, R; Couceiro, D; Carreiro, T; Dias, O; Rocha, I; Teixeira, MC;
PUBLISHED: 2022, SOURCE: GENES, VOLUME: 13, ISSUE: 2
AUTHORS: Viana, R; Couceiro, D; Carreiro, T; Dias, O; Rocha, I; Teixeira, MC;
PUBLISHED: 2022, SOURCE: GENES, VOLUME: 13, ISSUE: 2
INDEXED IN: Scopus WOS
Scopus WOS7
TITLE: Exploring synergies between plant metabolic modelling and machine learning
AUTHORS: Sampaio, Marta; Rocha, Miguel; Dias, Oscar;
PUBLISHED: 2022, SOURCE: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, VOLUME: 20
AUTHORS: Sampaio, Marta; Rocha, Miguel; Dias, Oscar;
PUBLISHED: 2022, SOURCE: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, VOLUME: 20
INDEXED IN: WOS
WOS8
TITLE: merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models Full Text
AUTHORS: Capela, Joao; Lagoa, Davide; Rodrigues, Ruben; Cunha, Emanuel; Cruz, Fernando; Barbosa, Ana; Bastos, Jose; Lima, Diogo; Ferreira, Eugenio C.; Rocha, Miguel ; Dias, Oscar;
PUBLISHED: 2022, SOURCE: NUCLEIC ACIDS RESEARCH, VOLUME: 50, ISSUE: 11
AUTHORS: Capela, Joao; Lagoa, Davide; Rodrigues, Ruben; Cunha, Emanuel; Cruz, Fernando; Barbosa, Ana; Bastos, Jose; Lima, Diogo; Ferreira, Eugenio C.; Rocha, Miguel ; Dias, Oscar;
PUBLISHED: 2022, SOURCE: NUCLEIC ACIDS RESEARCH, VOLUME: 50, ISSUE: 11
INDEXED IN: Scopus WOS
Scopus WOS9
TITLE: Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao C.; Sampaio, Marta; Sampaio, Claudia; Dias, Oscar;
PUBLISHED: 2022, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 19, ISSUE: 3
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao C.; Sampaio, Marta; Sampaio, Claudia; Dias, Oscar;
PUBLISHED: 2022, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 19, ISSUE: 3
INDEXED IN: Scopus WOS
Scopus WOS10
TITLE: Enhancing acetic acid and 5-hydroxymethyl furfural tolerance of C. saccharoperbutylacetonicum through adaptive laboratory evolution Full Text
AUTHORS: Alves, RF; Zetty Arenas, AM; Demirci, H; Dias, O; Rocha, I; Basso, TO; Freitas, S;
PUBLISHED: 2021, SOURCE: PROCESS BIOCHEMISTRY, VOLUME: 101
AUTHORS: Alves, RF; Zetty Arenas, AM; Demirci, H; Dias, O; Rocha, I; Basso, TO; Freitas, S;
PUBLISHED: 2021, SOURCE: PROCESS BIOCHEMISTRY, VOLUME: 101
INDEXED IN: Scopus WOS
Scopus WOS