1
TITLE: Future-proofing and maximizing the utility of metadata:The PHA4GE SARS-CoV-2 contextual data specification package  Full Text
AUTHORS: Griffiths, Emma J.; Timme, Ruth E.; Mendes, Catarina Ines; Page, Andrew J.; Alikhan, Nabil Fareed; Fornika, Dan; Maguire, Finlay; Campos, Josefina; Park, Daniel; Olawoye, Idowu B.; Oluniyi, Paul E.; Anderson, Dominique; Christoffels, Alan; da Silva, Anders Goncalves; Cameron, Rhiannon; Dooley, Damion; Katz, Lee S.; Black, Allison; Karsch Mizrachi, Ilene; Barrett, Tanya; Johnston, Anjanette; Connor, Thomas R.; Nicholls, Samuel M.; Witney, Adam A.; Tyson, Gregory H.; Tausch, Simon H.; Raphenya, Amogelang R.; Alcock, Brian; Aanensen, David M.; Hodcroft, Emma; Hsiao, William W. L.; Vasconcelos, Ana Tereza R.; MacCannell, Duncan R.; ...More
PUBLISHED: 2022, SOURCE: GIGASCIENCE, VOLUME: 11
INDEXED IN: Scopus WOS
2
TITLE: Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package  Full Text
AUTHORS: Griffiths, Emma J.; Timme, Ruth E.; Mendes, Catarina Ines; Page, Andrew J.; Alikhan, Nabil Fareed; Fornika, Dan; Maguire, Finlay; Campos, Josefina; Park, Daniel; Olawoye, Idowu B.; Oluniyi, Paul E.; Anderson, Dominique; Christoffels, Alan; da Silva, Anders Goncalves; Cameron, Rhiannon; Dooley, Damion; Katz, Lee S.; Black, Allison; Karsch Mizrachi, Ilene; Barrett, Tanya; Johnston, Anjanette; Connor, Thomas R.; Nicholls, Samuel M.; Witney, Adam A.; Tyson, Gregory H.; Tausch, Simon H.; Raphenya, Amogelang R.; Alcock, Brian; Aanensen, David M.; Hodcroft, Emma; Hsiao, William W. L.; Vasconcelos, Ana Tereza R.; MacCannell, Duncan R.; ...More
PUBLISHED: 2022, SOURCE: GIGASCIENCE, VOLUME: 11
INDEXED IN: WOS
3
TITLE: Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package  Full Text
AUTHORS: Griffiths, Emma J.; Timme, Ruth E.; Mendes, Catarina Ines; Page, Andrew J.; Alikhan, Nabil Fareed; Fornika, Dan; Maguire, Finlay; Campos, Josefina; Park, Daniel; Olawoye, Idowu B.; Oluniyi, Paul E.; Anderson, Dominique; Christoffels, Alan; da Silva, Anders Goncalves; Cameron, Rhiannon; Dooley, Damion; Katz, Lee S.; Black, Allison; Karsch Mizrachi, Ilene; Barrett, Tanya; Johnston, Anjanette; Connor, Thomas R.; Nicholls, Samuel M.; Witney, Adam A.; Tyson, Gregory H.; Tausch, Simon H.; Raphenya, Amogelang R.; Alcock, Brian; Aanensen, David M.; Hodcroft, Emma; Hsiao, William W. L.; Vasconcelos, Ana Tereza R.; MacCannell, Duncan R.; ...More
PUBLISHED: 2022, SOURCE: GIGASCIENCE, VOLUME: 11
INDEXED IN: WOS
4
TITLE: Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread
AUTHORS: Sophia David; Sandra Reuter; Simon R Harris; Corinna Glasner; Theresa Feltwell; Silvia Argimon; Khalil Abudahab; Richard Goater; Tommaso Giani; Giulia Errico; Marianne Aspbury; Sara Sjunnebo; Edward J Feil; Gian Maria Rossolini; David M Aanensen; Hajo Grundmann; Andi Koraqi; Denada Lacej; Petra Apfalter; Rainer Hartl; Youri Glupczynski; Te Din Huang; Tanya Strateva; Yuliya Marteva Proevska; Arjana Tambic Andrasevic; Iva Butic; Despo Pieridou Bagatzouni; Panagiota Maikanti Charalampous; Jaroslav Hrabak; Helena Zemlickova; Anette Hammerum; Lotte Jakobsen; Marina Ivanova; Anastasia Pavelkovich; Jari Jalava; Monica Osterblad; Laurent Dortet; Sophie Vaux; Martin Kaase; Soeren G Gatermann; Alkiviadis Vatopoulos; Kyriaki Tryfinopoulou; Akos Toth; Laura Janvari; Teck Wee Boo; Elaine McGrath; Yehuda Carmeli; Amos Adler; Annalisa Pantosti; Monica Monaco; Lul Raka; Arsim Kurti; Arta Balode; Mara Saule; Jolanta Miciuleviciene; Aiste Mierauskaite; Monique Perrin Weniger; Paul Reichert; Nina Nestorova; Sonia Debattista; Gordana Mijovic; Milena Lopicic; Orjan Samuelsen; Bjorg Haldorsen; Dorota Zabicka; Elzbieta Literacka; Manuela Canica; Vera Manageiro; Ana Kaftandzieva; Elena Trajkovska Dokic; Maria Damian; Brandusa Lixandru; Zora Jelesic; Anika Trudic; Milan Niks; Eva Schreterova; Mateja Pirs; Tjasa Cerar; Jesus Oteo; Belen Aracil; Christian Giske; Karin Sjostrom; Deniz Gur; Asli Cakar; Neil Woodford; Katie Hopkins; Camilla Wiuff; Derek J Brown; ...More
PUBLISHED: 2019, SOURCE: NATURE MICROBIOLOGY, VOLUME: 4, ISSUE: 11
INDEXED IN: Scopus WOS
5
TITLE: Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi  Full Text
AUTHORS: Fisher, MC; Ghosh, P; Shelton, JMG; Bates, K; Brookes, L; Wierzbicki, C; Rosa, GM; Farrer, RA; Aanensen, DM; Alvarado Rybak, M; Bataille, A; Berger, L; Boll, S; Bosch, J; Clare, FC; Courtois, EA; Crottini, A ; Cunningham, AA; Doherty Bone, TM; Gebresenbet, F; Gower, DJ; Hoglund, J; James, TY; Jenkinson, TS; Kosch, TA; Lambertini, C; Laurila, A; Lin, CF; Loyau, A; Martel, A; Meurling, S; Miaud, C; Minting, P; Ndriantsoa, S; O'Hanlon, SJ; Pasmans, F; Rakotonanahary, T; Rabemananjara, FCE; Ribeiro, LP; Schmeller, DS; Schmidt, BR; Skerratt, L; Smith, F; Soto Azat, C; Tessa, G; Toledo, LF; Valenzuela Sanchez, A; Verster, R; Voros, J; Waldman, B; Webb, RJ; Weldon, C; Wombwell, E; Zamudio, KR; Longcore, JE; Garner, TWJ; ...More
PUBLISHED: 2018, SOURCE: SCIENTIFIC REPORTS, VOLUME: 8, ISSUE: 1
INDEXED IN: WOS CrossRef: 22
6
TITLE: Whole-genome sequencing for routine pathogen surveillance in public health: A population snapshot of invasive Staphylococcus aureus in Europe  Full Text
AUTHORS: Aanensen, DM; Feil, EJ; Holden, MTG; Dordel, J; Yeats, CA; Fedosejev, A; Goater, R; Castillo Ramírez, S; Corander, J; Colijn, C; Chlebowicz, MA; Schouls, L; Heck, M; Pluister, G; Ruimy, R; Kahlmeter, G; Åhman, J; Matuschek, E; Friedrich, AW; Parkhill, J; Bentley, SD; Spratt, BG; Grundmann, H; Krziwanek, K; Stumvoll, S; Koller, W; Denis, O; Struelens, M; Nashev, D; Budimir, A; Kalenic, S; Pieridou Bagatzouni, D; Jakubu, V; Zemlickova, H; Westh, H; Larsen, AR; Skov, R; Laurent, F; Ettienne, J; Strommenger, B; Witte, W; Vourli, S; Vatopoulos, A; Vainio, A; Vuopio Varkila, J; Fuzi, M; Ungvári, E; Murchan, S; Rossney, A; Miklasevics, E; Balode, A; Haraldsson, G; Kristinsson, KG; Monaco, M; Pantosti, A; Borg, M; Van Santen Verheuvel, M; Huijsdens, X; Marstein, L; Jacobsen, T; Simonsen, GS; Airesde Sousa, M; De Lencastre, H; Luczak Kadlubowska, A; Hryniewicz, W; Straut, M; Codita, I; Perez Vazquez, M; Iglesias, JO; Spik, VC; Mueller Premru, M; Haeggman, S; Olsson Liljequist, B; Ellington, M; Kearns, A; ...More
PUBLISHED: 2016, SOURCE: mBio, VOLUME: 7, ISSUE: 3
INDEXED IN: Scopus CrossRef
7
TITLE: A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
AUTHORS: Matthew T G Holden; Li Yang Hsu; Kevin Kurt; Lucy A Weinert; Alison E Mather; Simon R Harris; Birgit Strommenger; Franziska Layer; Wolfgang Witte; Herminia de Lencastre ; Robert Skov; Henrik Westh; Helena Zemlickova; Geoffrey Coombs; Angela M Kearns; Robert L R Hill; Jonathan Edgeworth; Ian Gould; Vanya Gant; Jonathan Cooke; Giles F Edwards; Paul R McAdam; Kate E Templeton; Angela McCann; Zhemin M Zhou; Santiago Castillo Ramirez; Edward J Feil; Lyndsey O Hudson; Mark C Enright; Francois Balloux; David M Aanensen; Brian G Spratt; Ross R Fitzgerald; Julian Parkhill; Mark Achtman; Stephen D Bentley; Ulrich Nuebel; ...More
PUBLISHED: 2013, SOURCE: GENOME RESEARCH, VOLUME: 23, ISSUE: 4
INDEXED IN: Scopus WOS CrossRef
8
TITLE: Multilocus Sequence Typing and Further Genetic Characterization of the Enigmatic Pathogen, Staphylococcus hominis  Full Text
AUTHORS: Liangfen F Zhang; Jonathan C Thomas; Maria Miragaia ; Ons Bouchami; Fernando Chaves; Pedro A d'Azevedo; David M Aanensen; Herminia de Lencastre ; Barry M Gray; Ashley A Robinson;
PUBLISHED: 2013, SOURCE: PLOS ONE, VOLUME: 8, ISSUE: 6
INDEXED IN: Scopus WOS CrossRef
9
TITLE: Geographic distribution of Staphylococcus aureus causing invasive infections in Europe: A molecular-epidemiological analysis  Full Text
AUTHORS: Grundmann, H; Aanensen, DM; Van Den Wijngaard, CC; Spratt, BG; Harmsen, D; Friedrich, AW; Sabat, AJ; Muilwijk, J; Monen, J; Tami, A; Donker, T; Mittermayer, H; Krziwanek, K; Stumvoll, S; Koller, W; Denis, O; Struelens, M; Nashev, D; Budimir, A; Kalenic, S; Pieridou Bagatzouni, D; Jakubu, V; Zemlickova, H; Westh, H; Sorum, M; Skov, R; Laurent, F; Ettienne, J; Strommenger, B; Witte, W; Vourli, S; Vatopoulos, A; Vainio, A; Vuopio Varkila, J; Fuzi, M; Ungvari, E; Murchan, S; Rossney, A; Miklasevics, E; Balode, A; Haraldsson, G; Kristinsson, KG; Monaco, M; Pantosti, A; Borg, M; Van Santen Verheuvel, M; Huijsdens, X; Marstein, L; Jacobsen, T; Simonsen, GS; Aires de Sousa, M; De Lencastre, H; Luczak Kadlubowska, A; Hryniewicz, W; Straut, M; Codita, I; Perez Vazquez, M; Cuevas, O; Spik, VC; Mueller Premru, M; Haegman, S; Olsen Liljequist, B; Ellington, M; Kearns, A; Kock, R; Mellmann, A; Becker, K; Vogel, U; ...More
PUBLISHED: 2010, SOURCE: PLoS Medicine, VOLUME: 7, ISSUE: 1
INDEXED IN: Scopus CrossRef