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TITLE: Composition and abstraction of logical regulatory modules: application to multicellular systems  Full Text
AUTHORS: Nuno D Mendes ; Frederic Lang; Yves Stan Le Cornec; Radu Mateescu; Gregory Batt; Claudine Chaouiya ;
PUBLISHED: 2013, SOURCE: BIOINFORMATICS, VOLUME: 29, ISSUE: 6
INDEXED IN: Scopus WOS CrossRef
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TITLE: Dynamical modeling and analysis of large cellular regulatory networks  Full Text
AUTHORS: Berenguier, D; Chaouiya, C ; Monteiro, PT ; Naldi, A; Remy, E; Thieffry, D; Tichit, L;
PUBLISHED: 2013, SOURCE: CHAOS, VOLUME: 23, ISSUE: 2
INDEXED IN: Scopus WOS
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TITLE: Logical Modelling of Regulatory Networks, Methods and Applications  Full Text
AUTHORS: Claudine Chaouiya ; Elisabeth Remy;
PUBLISHED: 2013, SOURCE: BULLETIN OF MATHEMATICAL BIOLOGY, VOLUME: 75, ISSUE: 6
INDEXED IN: Scopus WOS CrossRef
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TITLE: Majority Rules with Random Tie-Breaking in Boolean Gene Regulatory Networks  Full Text
AUTHORS: Claudine Chaouiya ; Ouerdia Ourrad; Ricardo Lima;
PUBLISHED: 2013, SOURCE: PLOS ONE, VOLUME: 8, ISSUE: 7
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
5
TITLE: Path2Models: Large-scale generation of computational models from biochemical pathway maps
AUTHORS: Buchel, F; Rodriguez, N; Swainston, N; Wrzodek, C; Czauderna, T; Keller, R; Mittag, F; Schubert, M; Glont, M; Golebiewski, M; van Iersel, M; Keating, S; Rall, M; Wybrow, M; Hermjakob, H; Hucka, M; Kell, DB; Muller, W; Mendes, P; Zell, A; Chaouiya, C ; Saez Rodriguez, J; Schreiber, F; Laibe, C; Drager, A; Le Novere, N; ...More
PUBLISHED: 2013, SOURCE: BMC Systems Biology, VOLUME: 7
INDEXED IN: Scopus
IN MY: ORCID
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TITLE: SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools  Full Text
AUTHORS: Claudine Chaouiya ; Duncan Berenguier; Sarah M Keating; Aurelien Naldi; Martijn P van Iersel; Nicolas Rodriguez; Andreas Draeger; Finja Buechel; Thomas Cokelaer; Bryan Kowal; Benjamin Wicks; Gonçalves, Emanuel ; Julien Dorier; Michel Page; Pedro T Monteiro ; Axel von Kamp; Ioannis Xenarios; Hidde de Jong; Michael Hucka; Steffen Klamt; Denis Thieffry; Nicolas Le Novere; Julio Saez Rodriguez; Tomas Helikar; ...More
PUBLISHED: 2013, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 7, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 83
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TITLE: Automatic inference of regulatory and dynamical properties from incomplete gene interaction and expression data
AUTHORS: Corblin, F; Fanchon, E; Trilling, L; Chaouiya, C ; Thieffry, D;
PUBLISHED: 2012, SOURCE: 9th International Conference on Information Processing in Cells and Tissues, IPCAT 2012 in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), VOLUME: 7223 LNCS
INDEXED IN: Scopus CrossRef
IN MY: ORCID
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TITLE: Efficient handling of large signalling-regulatory networks by focusing on their core control
AUTHORS: Naldi, A; Monteiro, PT ; Chaouiya, C ;
PUBLISHED: 2012, SOURCE: 10th International Conference on Computational Methods in Systems Biology, CMSB 2012 in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), VOLUME: 7605 LNBI
INDEXED IN: Scopus CrossRef
IN MY: ORCID
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TITLE: Efficient Verification for Logical Models of Regulatory Networks
AUTHORS: Pedro T Monteiro ; Claudine Chaouiya ;
PUBLISHED: 2012, SOURCE: 6th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in 6TH INTERNATIONAL CONFERENCE ON PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, VOLUME: 154
INDEXED IN: Scopus WOS CrossRef
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TITLE: Logical modelling of gene regulatory networks with GINsim
AUTHORS: Chaouiya, C ; Naldi, A; Thieffry, D;
PUBLISHED: 2012, SOURCE: Methods in Molecular Biology, VOLUME: 804
INDEXED IN: Scopus CrossRef
IN MY: ORCID
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